View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_high_93 (Length: 330)
Name: NF19530_high_93
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_high_93 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 310
Target Start/End: Original strand, 27866154 - 27866464
Alignment:
| Q |
3 |
taaggattccatatggagtgacaatcaacgcttaannnnnnnnn-gttggagatctgggttcgaactctgaac-ttacatatattaagcttacgagaaca |
100 |
Q |
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| T |
27866154 |
taaggattccatatggagtgacaatcaacgcttaatttttttgttgttggtgatctgggttcgaactctgaaccttacatatattaaacttacgaaaaca |
27866253 |
T |
|
| Q |
101 |
acatttaaaaatttgcacacgcaagaagaatttcggccttgaacccaaaaattgcataaaatgtccaacttaataatgtcgacaatatc-aattcatttg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
27866254 |
acatttaaaaatttgcacacgcaagaagaatttcggccttgaacccaaaaattgcataaaatgtccaacttaataatgtcgacaatatcaaattcagttg |
27866353 |
T |
|
| Q |
200 |
aattattcaaacgataatgtggaattatagtacatactacatacggcgtaggtcaagagctatagctcctaactagaacagggcttgcctgaaaatttat |
299 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27866354 |
aattatttaaacgataatgtggaattatagtacatactacatacggcgttggtcatgagctatagctcctaactagaacagggcttacctgaaaatttat |
27866453 |
T |
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| Q |
300 |
tagctcgtagt |
310 |
Q |
| |
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||| ||||||| |
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| T |
27866454 |
tagttcgtagt |
27866464 |
T |
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