View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_1 (Length: 963)
Name: NF19530_low_1
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 803; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 803; E-Value: 0
Query Start/End: Original strand, 19 - 951
Target Start/End: Complemental strand, 2527630 - 2526701
Alignment:
| Q |
19 |
gtccaatccgaacggccacttgcgagggctctatttaatgcgagagtttgctctgcatgaactagctcatcaaaattggcaccgagggagtcgaacttga |
118 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2527630 |
gtccaatccgaccggccacttgcgagggctctatttaatgcgatagtttgctctgcatgaactagcccatcaaaattggcaccgagggagtcgaacttga |
2527531 |
T |
|
| Q |
119 |
gacattgagaagagcacactttaagttcccaacattaatgacgaggttctgtcattaatgcatagggctggctacatagatgacatgacccattttaaaa |
218 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2527530 |
gacattgagaagagcgcactttaagttcccaacattaatgacgaggttctgtcattaatgcatagggctggctacatagatcacatgacccattttaaaa |
2527431 |
T |
|
| Q |
219 |
ttaacaacacaaaaacaaacctccctataagagataagtgttgccaactgcgaattggggtctgtttcgatttgcttatttgatattttactggcataag |
318 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
2527430 |
ttaaca-caaaaaaacaaacctccctataagagataagtgttgccaattgcgaattggggtctatttcgatttgcttatttgatattttactggtataag |
2527332 |
T |
|
| Q |
319 |
cacattgtttaagagagcttatgaaaacttatgaattgtccatgagctgttttcaacttatttccaaaacctaagatagcttatgaaaatatcttattgc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2527331 |
cacattgtttaagagagcttatgaaaacttatgaattgtccatgagctgttttcaacttatttccaaaacctaagatagcttatgaaaatatcttattgc |
2527232 |
T |
|
| Q |
419 |
ttatgtcgaaactgtctgactatattttatcttttgttatacataagtaataatatgataagcctttatgctataagcccttcgttaagccctatatcca |
518 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2527231 |
ttatgtcaaaactgtgtgactatattttatcttttgttatacataagtaataatatgataagcctttatgctataagcccttcgttaacccctatatcca |
2527132 |
T |
|
| Q |
519 |
aacagggcccagtttttatgttttattttgctttaattgtgagattgtgattgagagtgagagataatgagcatagaagatttgatttgacagttcagtt |
618 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2527131 |
aacagggcccagtttttatgttttattttgctttaattgtgagattgtgattgagagtgagagataatgagcatagaagatttgatttgacagttcagtt |
2527032 |
T |
|
| Q |
619 |
tcctctttgcttttcattttattagaattcctgcaagatttataggttacttggaatatcatgaacttgttgattggcnnnnnnnntgctaatttcatat |
718 |
Q |
| |
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| T |
2527031 |
tcctctttgcttttca-tttattagaattcctgcaagatttataggttacttggaatatcatgaacttgttgattggc-aaaaaaatgctaatttcatat |
2526934 |
T |
|
| Q |
719 |
tttannnnnnncagcttctgattgtaagggtcacatgattaaagatttggatatgttgctttaagtcttttatcagcaaaaggctatgaaatatggagtg |
818 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2526933 |
tttatttttttcagcttctgattgtaagggtcatatgattaaagatttggatatgttgctttaagtcttttatcggcaaaaggctatgaaatatggagtg |
2526834 |
T |
|
| Q |
819 |
agttctttagtgattgcttgcctaacatcgaaactatggggtctcaagttgttgatgaaagtaataatgaaaaccattcgcaattccagcctctggcgcg |
918 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
2526833 |
agttctttagtgattgcttgcctaacatcgaaactatggggtctcaagttgttgatgaaagtaataatgaaaaccattcgcagttccagcctctggcacg |
2526734 |
T |
|
| Q |
919 |
gcaaaattcaatgtacaatcttacccttgatga |
951 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
2526733 |
gcaaaattcaatgtacaatcttacccttgatga |
2526701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 32577953 - 32578020
Alignment:
| Q |
320 |
acattgtttaagagagcttatgaaaac---ttatgaattgtccatgagctgttttcaacttatttcca |
384 |
Q |
| |
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||||||||| ||||||||||||||||| |||||| ||||| ||||||||||||| |||||||||| |
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| T |
32577953 |
acattgtttgagagagcttatgaaaacaacttatgacatgtccttgagctgttttcagcttatttcca |
32578020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 342 - 384
Target Start/End: Original strand, 29590621 - 29590663
Alignment:
| Q |
342 |
aaaacttatgaattgtccatgagctgttttcaacttatttcca |
384 |
Q |
| |
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| T |
29590621 |
aaaacttatgacttgtccataagttgttttcaacttatttcca |
29590663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 34652030 - 34652097
Alignment:
| Q |
344 |
aacttatgaattgtccatgagctgttttcaacttatttccaaaacct----aagatagcttatgaaaa |
407 |
Q |
| |
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||||||||| ||||||| |||||||||||||||||||||| || || ||||||||||||||||| |
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| T |
34652030 |
aacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa |
34652097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 7714318 - 7714281
Alignment:
| Q |
344 |
aacttatgaattgtccatgagctgttttcaacttattt |
381 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||| |
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| T |
7714318 |
aacttatgaaatgtcgatgagctgttttcaacttattt |
7714281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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