View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_10 (Length: 626)
Name: NF19530_low_10
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 17 - 620
Target Start/End: Complemental strand, 7177199 - 7176594
Alignment:
| Q |
17 |
caaacctgaaattttaataacattaattgttgaatgcaaaagcatagcagtatcagcaaaccacctaataagcatggaataaccttaggatgtcaaattc |
116 |
Q |
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| T |
7177199 |
caaacctgaaattttaataacattaattgttgaatgcaaaagcatagcagtatcagcaaaccacctaataagcatggaataaccttaggatgtcaaattc |
7177100 |
T |
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| Q |
117 |
attaaattgtcagttatttgaatgct--aacatcataaacaaatttagtgtcatagcctaattttaaaacaattctgaaagacacagacattagaactag |
214 |
Q |
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| T |
7177099 |
attaaattgtcagttatttgaatgcctcaacatcataaacaaatttagtgtcatagcctaattttaaaacaattctgaaagacacagacattagaactag |
7177000 |
T |
|
| Q |
215 |
tccagattacgattattaataatctagtaacaaccaagtagatttgataaacaatttagcagaagacaaaataaaacataacagaacaatatggaacaaa |
314 |
Q |
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| T |
7176999 |
tccagattacgattattaataatctagtaacaaccaagtagatttgataaacaatttagcagaagacaaaataaaacataacagaacaatatggaacaaa |
7176900 |
T |
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| Q |
315 |
aggtaataaaaattagtatcttttggttccactgaaaagtgaactaaaagagtacataacagaacagaacagaatgtcttgtttcgttctgttcatgttc |
414 |
Q |
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| T |
7176899 |
aggtaataaaaattagtatcttttggttccactgaaaagtgaactaaaagagtacataacagaacagaacagaatgtcttgtttcgttctgttcatgttc |
7176800 |
T |
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| Q |
415 |
cgaacacggtctcgatagcgacaagatgtcaatttcatttctaatagtaagtcataaccaaagttttgcattgaacattttcaagttcaaacaaaaagga |
514 |
Q |
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| T |
7176799 |
cgaacatggtctcgatagcgacaagatgtcaatttcatttctaatagtaagtcataaccaaagttttgcattgaacattttcaagttcaaacaaaaagga |
7176700 |
T |
|
| Q |
515 |
aagcacttcctagttcctatactgcctgggccagactatgccagaagccaattagcgttaaggaaaaaagcttaatttaacaatggttatatggtataat |
614 |
Q |
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| T |
7176699 |
aagcacttcctagttcctatactgcctgggccagactatgtcagaagccatttagcgttaaggcaaaatgcataatttaacaatagtacttaggtataat |
7176600 |
T |
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| Q |
615 |
gaaatt |
620 |
Q |
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|||||| |
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| T |
7176599 |
gaaatt |
7176594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 430 - 526
Target Start/End: Complemental strand, 7176530 - 7176434
Alignment:
| Q |
430 |
tagcgacaagatgtcaatttcatttctaatagtaagtcataaccaaagttttgcattgaacattttcaagttcaaacaaaaaggaaagcacttccta |
526 |
Q |
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|||| ||||||||||||||| ||| || || | |||||||||||| || || || ||||||||| |||||||||||||| ||||||| | ||||||| |
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| T |
7176530 |
tagcaacaagatgtcaattttattgctcattggaagtcataaccacaggttagctttgaacattctcaagttcaaacaataaggaaaactcttccta |
7176434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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