View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_100 (Length: 325)
Name: NF19530_low_100
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 11890402 - 11890611
Alignment:
| Q |
1 |
atgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctcaaaactgca |
100 |
Q |
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| T |
11890402 |
atgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctcaaaactgca |
11890501 |
T |
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| Q |
101 |
attcagagttgaaaatttagtcttattttgaaccnnnnnnngtttaataatttactcataaatagaaacatggatataatcatataattatatatgtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11890502 |
attcagagttgaaaatttagtcttattttgaaccaaaaaaagtttaataatttactcataaatagaaacatggatataatcatatgattatatatgtttg |
11890601 |
T |
|
| Q |
201 |
attgcttttg |
210 |
Q |
| |
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|||||||||| |
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| T |
11890602 |
attgcttttg |
11890611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 11902746 - 11902955
Alignment:
| Q |
1 |
atgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctcaaaactgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902746 |
atgatgagtctcttggaatcaattcttctggaacttcccatctttgattatttgaatcagtgattcttactcttaatttatccttggcctcaaaactgca |
11902845 |
T |
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| Q |
101 |
attcagagttgaaaatttagtcttattttgaaccnnnnnnngtttaataatttactcataaatagaaacatggatataatcatataattatatatgtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11902846 |
attcagagttgaaaatttagtcttattttgaaccaaaaaaagtttaataatttactcataaatagaaacatggatataatcatatgattatatatgtttg |
11902945 |
T |
|
| Q |
201 |
attgcttttg |
210 |
Q |
| |
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|||||||||| |
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| T |
11902946 |
attgcttttg |
11902955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 11890663 - 11890707
Alignment:
| Q |
262 |
ctatgattggttgttggttagttagttagttagttacctggcact |
306 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11890663 |
ctatgattggttattggttagttagttagttagttacctggcact |
11890707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 11903007 - 11903051
Alignment:
| Q |
262 |
ctatgattggttgttggttagttagttagttagttacctggcact |
306 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11903007 |
ctatgattggttattggttagttagttagttagttacctggcact |
11903051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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