View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_102 (Length: 322)
Name: NF19530_low_102
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_102 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 43864235 - 43863947
Alignment:
| Q |
18 |
gaccaatccttcgccaaccgccctatccctgaatcagttgctgctcaacccaacgtcaacgacacactcgcatggtcccatgccgactcacggtggcgca |
117 |
Q |
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| T |
43864235 |
gaccaatccttcgccaaccgccctatccctgaatcagttgctgctcaacccaacgtcaacgacacactcgcatggtcccatgccgactcacggtggcgta |
43864136 |
T |
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| Q |
118 |
accgtagacgtatctgcaccacacaaatattcaccacccaccgccttgaccttctccaacatctccgtcaccggaaagttgagcaactagtccaacacct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43864135 |
accgtagacgtatctgcaccacacaaatattcaccacccaccgccttgaccttctccaacatctccgtcaccggaaagttgagcaactagtccaacacct |
43864036 |
T |
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| Q |
218 |
tcacaaaaaagcagtagagaaaacaaccgttgacataggtgaacttgctttcgccacaatgttgaacttggtttccaacacggtgttct |
306 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43864035 |
tcacaaaaaagcagcagagaaaacaaccgttgacataggtgaacttgctttcgccaccatgttgaacttggtttccaacacggtgttct |
43863947 |
T |
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