View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_103 (Length: 316)
Name: NF19530_low_103
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_103 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 13012353 - 13012078
Alignment:
| Q |
19 |
ggaagaggcttgagacaaggtgatccattatcaccctatctttttatcatgtgtgctaaaggtatgacatctctgataaaacaagctgaaaggaacaaca |
118 |
Q |
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| T |
13012353 |
ggaagaggcttgagacaaggtgatccattatcaccctatcattttatcttgtgtgttgaaggtatgacatctctgttaaaacaagctgaaaggaacaaca |
13012254 |
T |
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| Q |
119 |
ttttgcatggaataaaagtttgtcatagagcctcgacca-tagccacctcctttttgcagatgatatctttctcnnnnnnnngagctaatgaggttgaaa |
217 |
Q |
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| T |
13012253 |
ttttgcatggaataaaggtttgtcatagagcctcggccattagccacctcctttttgcagatgatatctttctc-tttttttgagctaatgaggttgaaa |
13012155 |
T |
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| Q |
218 |
caaatgctttgnnnnnnnttctagatgattatgctaacgcttctggtcagatgatcaatatgcagaaatcataaata |
294 |
Q |
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| T |
13012154 |
caaatgctttgaaaaaaattctagatgattatgctaacgtttctggtcagatgatcaatatgcagaaatcagaaata |
13012078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 45452875 - 45453048
Alignment:
| Q |
11 |
ttattctaggaagaggcttgagacaaggtgatccattatcaccctatctttttatcatgtgtgctaaaggtatgacatctctgataaaacaagctgaaag |
110 |
Q |
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| T |
45452875 |
ttattccaggaagaggcttgagacaaggtgatccattatcaccctatctttttatcttgtgtgctggaggtatgacatctctgattaaacaagctgaaag |
45452974 |
T |
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| Q |
111 |
gaacaacattttgcatggaataaaagtttgtcatagagcctcgacca-tagccacctcctttttgcagatgata |
183 |
Q |
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| T |
45452975 |
gaacaacattttgcatggaataaaggtttgttgtatagccccggccattagccacctcctttttgcagatgata |
45453048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 45457521 - 45457615
Alignment:
| Q |
200 |
gagctaatgaggttgaaacaaatgctttgnnnnnnnttctagatgattatgctaacgcttctggtcagatgatcaatatgcagaaatcataaata |
294 |
Q |
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| T |
45457521 |
gagctagtgaggttgaaacaaatgctttgaaaaaaattctagatgattatgctgccgcttctggtcagatgatcaatatgcaaaaatcagaaata |
45457615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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