View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_105 (Length: 314)
Name: NF19530_low_105
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_105 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 37080982 - 37081287
Alignment:
| Q |
1 |
caacaacaccaaaattaagagagtgagtggaggaggagagatctgggaattgaaggagtaatgaagctgtaaataaagaggatgtgatgaccaagatctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37080982 |
caacaacaccaaaattaagagagtgagtggaggaggagagatctgggaattgaaggagtaatgaagctataaataaagaggatgtgatgaccaagatctg |
37081081 |
T |
|
| Q |
101 |
gaaactgtgttctgttttcgcagctataacggtcggtcgcggccgtaacggcgttacgtaacggcgatttcatgtgatttttcttcccaccg-ttaaaac |
199 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37081082 |
gaaactgtgttctgttttcgcagctataacgatcggtcgcggctgtaacggcgttacgtaacggcgatttcatgtgatttttcttcccaccgtttaaaac |
37081181 |
T |
|
| Q |
200 |
aggcaaaaacggttttgcctcttgcccataccattttgtaaaggccgttatcgcggtaacaccccgttttttaaaaccttgaactttgcagtgattctga |
299 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
37081182 |
aggcaaaaacggttttgcctcttgcccataccgttttttaaaggccgttaacacggtaacgccccgttttttaaaaccttgaactttgcagtgattccta |
37081281 |
T |
|
| Q |
300 |
tgatgt |
305 |
Q |
| |
|
|||||| |
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|
| T |
37081282 |
tgatgt |
37081287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 275
Target Start/End: Complemental strand, 35739638 - 35739415
Alignment:
| Q |
47 |
gaattgaaggagtaatgaagctgtaaataaagaggatgtgatgaccaagatctggaaactgtgttctgttttcgcagctataacggtcggtcgcggccgt |
146 |
Q |
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||||||||||||||||||| | ||||| ||||| || ||||||||||| |||| ||||| || |||| ||||||||| | ||| |||||||| ||| |
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| T |
35739638 |
gaattgaaggagtaatgaacc-gtaaagaaagaagaggtgatgaccaaaatctagaaaccgtcttcttttttcgcagttgtaa----tggtcgcggtcgt |
35739544 |
T |
|
| Q |
147 |
aacggcgttacgtaacggcgatttcatgtgatttttcttcccaccgttaaaacaggcaaaaacggttttgcctcttgcccataccattttgtaaaggccg |
246 |
Q |
| |
|
||||||||||| | |||||| |||| ||||||||| ||||||||| ||||| | |||||||||||| | |||||| ||||| |||||||| ||||| |
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| T |
35739543 |
aacggcgttacatcacggcgttttcgtgtgattttccttcccaccattaaatcgggcaaaaacggtaacatcgcttgcctataccgttttgtaatggccg |
35739444 |
T |
|
| Q |
247 |
ttatcgcggtaacaccccgttttttaaaa |
275 |
Q |
| |
|
|| ||| ||||| |||| |||||||||| |
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| T |
35739443 |
ttttcgtggtaatgccccattttttaaaa |
35739415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 36033580 - 36033293
Alignment:
| Q |
1 |
caacaacaccaaaattaagagagtgagtggaggaggagagatctgggaattgaaggagtaatgaagctgtaaataaagaggatgtgatgaccaagatctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |||| ||||||||| |||||| |
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| T |
36033580 |
caacaacaccaaaattaagagagtgagtggaggagaagagatctggaaattgaaggagcaatgaagctgtaaatatagag---gtgatgaccgggatctg |
36033484 |
T |
|
| Q |
101 |
gaaactgtgttc-tgttttcgcagctataacggtcggtc-------------------gcggccgtaacggcgttacgtaacggcgatttcatgtgattt |
180 |
Q |
| |
|
||||| |||||| | |||| |||||| |||||| | || |||||| ||| ||||||||||||| ||| |||| ||||||| |
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|
| T |
36033483 |
gaaacagtgttcttttttttgcagctgcaacggttgatcgcggccaaaacgtcgtgccgcggccataatggcgttacgtaacagcgttttcccgtgattt |
36033384 |
T |
|
| Q |
181 |
ttcttcccaccgttaaaacaggcaaaaacggttttgcctcttgcccataccattttgtaaaggccgttatcgcggtaacaccccgtttttt |
271 |
Q |
| |
|
|||||||||| |||||||| | ||| ||| || | ||| | |||| ||||| |||||||| ||||||||||||||||||||| ||||||| |
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| T |
36033383 |
ttcttcccacggttaaaacggccaacaactgtatcgccgcctgcctataccgttttgtaatagccgttatcgcggtaacaccctgtttttt |
36033293 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 7805797 - 7805946
Alignment:
| Q |
1 |
caacaacaccaaaattaagagagtgagtggaggaggagagatctgggaattgaaggagtaatgaagctgtaaataaagaggatgtgatgaccaagatctg |
100 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |
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|
| T |
7805797 |
caacaacaccaaaattaaatgagcgagtggaggaggacagatacgggaattgaaggagtaacaaagctgtaaataaagaggaggtgatgacaaagatctg |
7805896 |
T |
|
| Q |
101 |
gaaactgtgttctgttttcgcagctataacggtcggtcgcggccgtaacg |
150 |
Q |
| |
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|||| |||||| | |||||| |||| ||| || ||||||| || |||||| |
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| T |
7805897 |
gaaattgtgttattttttcgtagctgtaaagggcggtcgcagctgtaacg |
7805946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 240
Target Start/End: Original strand, 7805964 - 7806055
Alignment:
| Q |
149 |
cggcgttacgtaacggcgatttcatgtgatttttcttcccaccgttaaaacaggcaaaaacggttttgcctcttgcccataccattttgtaa |
240 |
Q |
| |
|
||||||||| || || || ||||||||||||| ||||||||| | ||||||||| ||||||||| | ||||||||| ||||| ||| |||| |
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| T |
7805964 |
cggcgttacatatcgacgttttcatgtgatttgtcttcccactgctaaaacaggaaaaaacggtatctcctcttgcctataccgtttcgtaa |
7806055 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 27983802 - 27983942
Alignment:
| Q |
1 |
caacaacaccaaaattaagagagtgagtggaggaggagagatctgggaattgaaggagtaatgaagctgtaaataaagaggatgtgatgaccaagatctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
27983802 |
caacaacaccaaaattaagagagtgagtggaggagaagagatctaaaaattgaaggagtaatgaagctgtaaataaagag---gtgatgactgggatctg |
27983898 |
T |
|
| Q |
101 |
gaaactgtgttctgttttcgcagctataacggtcggtcgcggcc |
144 |
Q |
| |
|
||| |||||||| |||| |||| | |||| ||| |||||||| |
|
|
| T |
27983899 |
gaatatgtgttctatttttgcagttgtaacaatcgatcgcggcc |
27983942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 41968881 - 41968790
Alignment:
| Q |
2 |
aacaacaccaaaattaagagagtgagtggaggaggagagatctgggaattgaaggagtaatgaagctgtaaataaagaggatgtgatgaccaa |
94 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| ||||||||||||| || ||||||||||| |
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|
| T |
41968881 |
aacaacaccaaaattaagagagtctgtggaggaggagagatctaagaattgaactagtaatgaa-ctgtaaataaagaagaggtgatgaccaa |
41968790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 229060 - 229130
Alignment:
| Q |
9 |
ccaaaattaagagagtgagtggaggaggagagatctgggaattgaaggagtaatgaagctgtaaataaaga |
79 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
229060 |
ccaaaattaagagagtgggtgaaggaggagagatatgggaattgaaggagtaatgaagctttaaataaaga |
229130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 264
Target Start/End: Original strand, 229222 - 229328
Alignment:
| Q |
158 |
gtaacggcgatttcatgtgatttttcttcccaccgttaaaacaggcaaaaacggttttgcctcttgcccataccattttgtaaaggccgttatcgcggta |
257 |
Q |
| |
|
|||||| || |||| ||||||| ||||||||| | ||||||| ||||| |||||| | || | | || ||||| || ||||| |||||||||||||||| |
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|
| T |
229222 |
gtaacgccgttttcttgtgattcttcttcccaaccttaaaacgggcaataacggtatcgctgccttcctataccgttctgtaacggccgttatcgcggta |
229321 |
T |
|
| Q |
258 |
acacccc |
264 |
Q |
| |
|
|| |||| |
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|
| T |
229322 |
acgcccc |
229328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 32953500 - 32953362
Alignment:
| Q |
1 |
caacaacaccaaaattaagagagtgagtggaggaggagagatctgggaattgaaggagtaatgaagctgtaaataaagaggatgtgatgaccaagatctg |
100 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| | |||||||| ||| ||||||||| | ||||||||||||| |||| |||||||| | |||||| |
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|
| T |
32953500 |
caacaacgccaaaattaagagagtgggtggaggagaatagatctggaaatcaaaggagtaacggagctgtaaataaaaaggaggtgatgactaggatctg |
32953401 |
T |
|
| Q |
101 |
gaaa-ctgtgttctgttttcgcagctataacggtcggtc |
138 |
Q |
| |
|
|||| |||||||| |||| |||||| ||| ||| |||| |
|
|
| T |
32953400 |
gaaatttgtgttctttttttgcagctgtaatggttggtc |
32953362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 29521932 - 29522020
Alignment:
| Q |
5 |
aacaccaaaattaagagagtgagtggaggaggagagatctgggaattgaaggagtaatgaagctgtaaataaagaggatgtgatgaccaa |
94 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| || ||||||||||| |
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| T |
29521932 |
aacatcaaaattaaaagagtcggtggaggaggagagatctaggaattgaaggagtaatgaa-ctgtaaataaagaagaggtgatgaccaa |
29522020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 29522038 - 29522181
Alignment:
| Q |
137 |
tcgcggccgtaacggcgttacgtaacggcgatttcatgtgatttttcttcccaccgttaaaacaggcaaaaacggttttgcctcttgcccataccatttt |
236 |
Q |
| |
|
||||||| ||||||||||||||| || | | ||| ||||||||| ||||||||||||||| | |||||||||||| | | | |||||| |||| |||| |
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|
| T |
29522038 |
tcgcggcggtaacggcgttacgtcacagtgttttg-tgtgattttacttcccaccgttaaatcgggcaaaaacggtatcgtcgcttgcctatacggtttt |
29522136 |
T |
|
| Q |
237 |
gtaaaggccgttatcgcggtaaca-ccccgttttttaaaaccttg |
280 |
Q |
| |
|
||| | ||||| ||||| ||| | |||| ||||||||||||||| |
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|
| T |
29522137 |
ataacgtccgttttcgcgataatatcccctttttttaaaaccttg |
29522181 |
T |
|
Back To:
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