View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_11 (Length: 586)
Name: NF19530_low_11
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 11 - 570
Target Start/End: Complemental strand, 5655008 - 5654449
Alignment:
| Q |
11 |
cataggttacagcaaaggttgcatagtcaaatgtaattatgttgtttcttttagcagttaagtgtgttccttttggcgtctgatacatttttcaaatgta |
110 |
Q |
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| T |
5655008 |
cataggttacagcaaaggttgcatagtcaaatgtaattatgttgtttcttttagcagttaagtgtgttccttttggcgtctgatacatttttcaaatgta |
5654909 |
T |
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| Q |
111 |
tgtatcagtgtcttacctagtattcgtgtttgtgtcaatatttcataggctctggcattcgcatttgaaattatgtctagacaccaaaacatgtatacac |
210 |
Q |
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| T |
5654908 |
tgtatcagtgtcttacctagtattcgtgtttgtgtcaatatttcataggctccggcattcgcatttgaaattatgtctagacaccaaaacatgtatacac |
5654809 |
T |
|
| Q |
211 |
tcannnnnnngcttcttgataaaaaatgagcatgtctttgctgcacaattgtcaattatcattgaagtcaatgatctcgaccgttgatgaagattggaac |
310 |
Q |
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| T |
5654808 |
tcatttttttgctgcttgataaaaaatgagcatgtctttgctgcacaatcatcaattatcattgaagtcaatgatctcgaccgttgatgaagattggaac |
5654709 |
T |
|
| Q |
311 |
ggctaatatttgatgttatggatttgtcgagttacaatttgagtcatctgatctttatccaattgattaaattgtctaacagcagaaattaaaggaatta |
410 |
Q |
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| T |
5654708 |
ggcgaatatttgatgttatggatttgtcgagttacaatttgagtcatctgatctttatccaattgattaaattgtctaacagcagaaattaaaggaatta |
5654609 |
T |
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| Q |
411 |
ttgactaatattactgaatcattcattcccatatatgaatgaatattcaaaacacagaaagtggttcatgtaaacattctctttgttggtccatgtaaaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5654608 |
ttgactaatattactgaatcattcattcccatatatgaatgaatattcaaaacacagaaagtggttcatgtaaacattttctttgttggtccatgtaaaa |
5654509 |
T |
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| Q |
511 |
taaattgacaatgacatagcaaagtggaataaagaatgaaagaaagaaagaggaagttac |
570 |
Q |
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| T |
5654508 |
taaattgacaatgacatagcaaagtggaataaagaatgaaagaaagaaagaggaagttac |
5654449 |
T |
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