View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_low_111 (Length: 312)
Name: NF19530_low_111
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_111 |
 | |
|
| [»] scaffold0427 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 3385965 - 3385700
Alignment:
| Q |
25 |
tcatcatttattacataacataattcattgaacttatcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggac |
124 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3385965 |
tcatcatttaatacataacataattcattgaacgtgtcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggac |
3385866 |
T |
|
| Q |
125 |
ttgagtgacacttatattcaaagttgaagaaccttgatattcttcaaattatattaaataatacatttttagagaatcaaaacaacttcataacattacc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3385865 |
ttgagtgacacttatattcaaagttgaagaaccttgatattcttcaagttatattaaagaataaatttttagagaatcaaaacaacttcataacattacc |
3385766 |
T |
|
| Q |
225 |
cttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3385765 |
cttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattga |
3385700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 290
Target Start/End: Original strand, 4296383 - 4296648
Alignment:
| Q |
25 |
tcatcatttattacataacataattcattgaacttatcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggac |
124 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4296383 |
tcatcatttaatacataacataattcattgaacgtgtcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggac |
4296482 |
T |
|
| Q |
125 |
ttgagtgacacttatattcaaagttgaagaaccttgatattcttcaaattatattaaataatacatttttagagaatcaaaacaacttcataacattacc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4296483 |
ttgagtgacacttatattcaaagttgaagaaccttgatattcttcaagttatattaaagaataaatttttagagaatcaaaacaacttcataacattacc |
4296582 |
T |
|
| Q |
225 |
cttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4296583 |
cttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattga |
4296648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 7571 - 7320
Alignment:
| Q |
25 |
tcatcatttattacataacataattcattgaacttatcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggac |
124 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7571 |
tcatcatttaatacataacataattcattgaacgtgtcagttacattttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggac |
7472 |
T |
|
| Q |
125 |
ttgagtgacacttatattcaaagttgaagaaccttgatattcttcaaattatattaaataatacatttttagagaatcaaaacaacttcataacattacc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7471 |
ttgagtgacacttatattcaaagttgaaaaaccttga--------------tattaaagaataaatttttagagaatcaaaacaacttcataacattacc |
7386 |
T |
|
| Q |
225 |
cttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattga |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7385 |
cttttttcaacaaaatgctcagaaacccaattgtgaaaattagaaaattgaattaaaaaatattga |
7320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 165
Target Start/End: Complemental strand, 12997323 - 12997205
Alignment:
| Q |
48 |
ttcattgaacttatcagttacat-tttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggacttgagtgacacttatattcaaa |
146 |
Q |
| |
|
|||||||||| |||||||||||| ||| | |||||||||||||| ||| |||||| |||||||||| |||||||| ||||| ||| ||| || ||||| | |
|
|
| T |
12997323 |
ttcattgaacctatcagttacatgtttttgaaacaaattaagctctttatctaaggttgaattttccattgagtgaacttgtgtggcacgtagattcaga |
12997224 |
T |
|
| Q |
147 |
gttgaagaaccttgatatt |
165 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
12997223 |
attgaagaacctttatatt |
12997205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 13030917 - 13030800
Alignment:
| Q |
49 |
tcattgaacttatcagttacat-tttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggacttgagtgacacttatattcaaag |
147 |
Q |
| |
|
||||||||| |||||||||||| ||| | ||||||| |||| | ||| |||||| |||||||||| |||||||| ||||| ||| ||| || ||||| | |
|
|
| T |
13030917 |
tcattgaacctatcagttacatgtttttgaaacaaactaagttctttatctaaggttgaattttccattgagtgaacttgtgtggcacgtagattcagaa |
13030818 |
T |
|
| Q |
148 |
ttgaagaaccttgatatt |
165 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
13030817 |
ttgaagaaccttgatatt |
13030800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 13008562 - 13008445
Alignment:
| Q |
48 |
ttcattgaacttatcagttacat-tttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggacttgagtgacacttatattcaaa |
146 |
Q |
| |
|
|||||||||| |||||| ||||| ||| | |||||||||||||| ||| |||| |||||||| ||| || ||||||||||| ||| ||| || ||||| | |
|
|
| T |
13008562 |
ttcattgaacctatcagatacatgtttttgaaacaaattaagctctttatctatgcttgaatattccatagagtggacttgggtggcacgtagattcaca |
13008463 |
T |
|
| Q |
147 |
gttgaagaaccttgatat |
164 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
13008462 |
attgaagaacctttatat |
13008445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 13012120 - 13012003
Alignment:
| Q |
49 |
tcattgaacttatcagttacat-tttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggacttgagtgacacttatattcaaag |
147 |
Q |
| |
|
||||||||| |||||||||||| ||| | |||||| |||||| ||| |||||| |||||||||| |||||||| ||||||||| || || ||| | | |
|
|
| T |
13012120 |
tcattgaacctatcagttacatgtttttgaaacaagctaagctctttatctaaggttgaattttccattgagtgaacttgagtggcatgtagatttagaa |
13012021 |
T |
|
| Q |
148 |
ttgaagaaccttgatatt |
165 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
13012020 |
ttgaagaacctttatatt |
13012003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 165
Target Start/End: Complemental strand, 12976163 - 12976045
Alignment:
| Q |
48 |
ttcattgaacttatcagttacat-tttctaaaacaaattaagctatttttctaagcttgaattttctattgagtggacttgagtgacacttatattcaaa |
146 |
Q |
| |
|
|||||||||| |||||| ||||| ||| | |||||||| ||||| ||| ||||||||||||| || ||||| || ||||||||| ||| || ||||| | |
|
|
| T |
12976163 |
ttcattgaacctatcagatacatgtttttgaaacaaatcaagctctttgtctaagcttgaatattgcattgaatgaacttgagtggcacgtagattcaga |
12976064 |
T |
|
| Q |
147 |
gttgaagaaccttgatatt |
165 |
Q |
| |
|
|||| ||||||| ||||| |
|
|
| T |
12976063 |
attgatgaacctttatatt |
12976045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University