View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_112 (Length: 312)
Name: NF19530_low_112
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 20991819 - 20992104
Alignment:
| Q |
1 |
aaaattgtgggcagaccatggctctcactgtattcgggataaatctatattaaaggtgatcggaattcatgcaggtcttgtaaaagaaaagaatcatata |
100 |
Q |
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| T |
20991819 |
aaaattgtgggcagaccatggct-tcactgtattcgggataaatctatattaaaggtgatcggaattcatgcaggtcttgtaaaagaaaagaatcgtata |
20991917 |
T |
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| Q |
101 |
gataagcacactgtgatgatagtttcagattttttagaaactcagcagtggaattgtgacatggacagataatataggatggtactatacggatactata |
200 |
Q |
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| T |
20991918 |
gataagcacactgtgatgatagtttcagattttttagaaactcagcagtggaattgtgacatggacagataatataggatggtactatac---------- |
20992007 |
T |
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| Q |
201 |
ttgatattatagtgtttaattatttagatgtaaagggaggaaattaatacccaggataataaaatttaacattcatatgatgtgttggatgctatgtt |
298 |
Q |
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| T |
20992008 |
-tgatattatagtgtttagttatttagatgtaaagggaggaaattaatacccaggataataaaatttaacatttgtatgatgtgttggatactatgtt |
20992104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 21001820 - 21002002
Alignment:
| Q |
38 |
gataaatctatattaaaggtgatcggaattcatgcaggtcttgtaaaagaaaagaatcatatagataagcacactgtg--atgatagtttcagatttttt |
135 |
Q |
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||||||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| || ||| |||| || | ||||| ||||||| |
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| T |
21001820 |
gataaatgtatattaagggtgatcggaattcatgctcgtctggtaaaagaaaagaatcatatagattagaacattgtgatattagagtttaagattttgg |
21001919 |
T |
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| Q |
136 |
agaaactcagcagtggaattgtgacatggacagataatataggatggtactatacggatactatattgatattatagtgttta |
218 |
Q |
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| T |
21001920 |
agaaactcgacagtggaattttgacaaagacagataatataggatggtactataatgatactatgttgaaattatagtcttta |
21002002 |
T |
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