View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_114 (Length: 303)
Name: NF19530_low_114
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_114 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 36525170 - 36524883
Alignment:
| Q |
1 |
tgcagcattcagatggggattccaagggacatttgaagaatatttttccgggtattttgtggcatttggaacttgattttctgcaaatacattcgcattt |
100 |
Q |
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| T |
36525170 |
tgcagcattcagatggggattccaagggacatttgaagaatatttttccgggtattttgtggcatttggaacttgattttctgcaaatacattcgcattt |
36525071 |
T |
|
| Q |
101 |
gagtgatgggatgaagtcttaggtactgcatcactcacatgagctttaactatcatgtcgtataaagatcactttgcttggtcagtcaacacgctattgg |
200 |
Q |
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| T |
36525070 |
gagtgatgggatgaagtcttaggtactgcatcactcacatgagctttaactatcatgtcctataaagatcactttgcttggtcagtcaacacgctattgg |
36524971 |
T |
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| Q |
201 |
cttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagtagcaatgcgagttttctgtactgttt |
288 |
Q |
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| T |
36524970 |
cttccccaatcaacttgaacgcagcttctgcaccagtaaatttatttttatcaagatgaagtagcaatccgagttttctgtactgttt |
36524883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 288
Target Start/End: Complemental strand, 36531471 - 36531218
Alignment:
| Q |
32 |
tttgaagaatatttttccgggtattttgtggcatttggaacttgattttctgcaaatacattcgcatttgagtgatgggatgaagtcttaggtactgcat |
131 |
Q |
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| T |
36531471 |
tttgaagaacattttttctgatgttttgttgcattaggaacttgatttgctgcaggt---ttcccattagagggatgggatgaggtcttagatgctgcag |
36531375 |
T |
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| Q |
132 |
cactcacatgagctttaactatcatgtcgtataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgc |
231 |
Q |
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| T |
36531374 |
ctctaacatgggctttaacctttatgtcgtataaagaccgcgttgctttatcactcaacaccctattggcttccccaatcaacttgaaagcagcttctgc |
36531275 |
T |
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| Q |
232 |
accagcaaatttatttttatcaggatgaagtagcaatgcgagttttctgtactgttt |
288 |
Q |
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||||||| ||||||||||||||||||||||||||| ||| || || |||||||||| |
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| T |
36531274 |
accagcagatttatttttatcaggatgaagtagcagtgcaagcttcttgtactgttt |
36531218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 26305989 - 26306118
Alignment:
| Q |
156 |
tgtcgtataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcagg |
255 |
Q |
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| T |
26305989 |
tgtcatataaagatcgttgtgcttggtcactcaaaaccctattggcttctccaatcaacttgaaagcagcttcagcaccagaaaatttatttttatcagg |
26306088 |
T |
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| Q |
256 |
atgaagtagcaatgcgagttttctgtactg |
285 |
Q |
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| T |
26306089 |
atgaagtagcagtgcgagctttctgtactg |
26306118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 266
Target Start/End: Original strand, 47090535 - 47090640
Alignment:
| Q |
161 |
tataaagatcactttgcttggtcagtcaacacgctattggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaa |
260 |
Q |
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|||||||| | ||||| ||||||| |||| || || || || ||| | ||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| |
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| T |
47090535 |
tataaagaacgctttgtttggtcactcaatactctgttagcatccacgatcaacttgaaagcagcctctgccccagcagatttatttttatcaggatgaa |
47090634 |
T |
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| Q |
261 |
gtagca |
266 |
Q |
| |
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|||||| |
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| T |
47090635 |
gtagca |
47090640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 6791535 - 6791477
Alignment:
| Q |
200 |
gcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatg |
258 |
Q |
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||||||||||||| ||| || |||||||||||||||||||| || ||||| |||||||| |
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| T |
6791535 |
gcttccccaatcagcttaaatgcagcttctgcaccagcaaacttgtttttgtcaggatg |
6791477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 49156796 - 49156858
Alignment:
| Q |
200 |
gcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagt |
262 |
Q |
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| T |
49156796 |
gcttctccaatcagcttaaatgcagcttcagcaccggcaaacttgtttttatcaggatgaagt |
49156858 |
T |
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