View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_115 (Length: 303)
Name: NF19530_low_115
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_115 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 42306681 - 42306901
Alignment:
| Q |
13 |
aatatagagaatcaagaagaaagaatcacaaaggagattagaattttaatagaataccatataataaaggttacaaagattatatataataaacttaaaa |
112 |
Q |
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| T |
42306681 |
aatatagagaatcaagaagagagaataacaaaggagattagaattttaacagaataccatataataaaggttacaaagattatatataataaacttaaaa |
42306780 |
T |
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| Q |
113 |
ggactagattactaatcatccctcaaagtcacgatgcattaacagcgatagcctaaaaggtttgtcaactacgacaccaaaacgtactcgatgaactccc |
212 |
Q |
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| T |
42306781 |
ggactagattactaatcatccctcaaagtcacaatgcattaacagcgatagcctaaaaggtttgtcaactacgatgccaaaacgtactcgatgaactccc |
42306880 |
T |
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| Q |
213 |
ctctaacatgctcttgaactc |
233 |
Q |
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||||||||||||||||||||| |
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| T |
42306881 |
ctctaacatgctcttgaactc |
42306901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 42306895 - 42306979
Alignment:
| Q |
204 |
tgaactcccctctaacatgctcttgaactctgctttcaaacgtagtcataacttgtcaactggttcaattccaaggagatagaag |
288 |
Q |
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| T |
42306895 |
tgaactcccctctaacatgctcttgaactccgctttcaaacgtggtcataacttgtcaactggttcaattccaaggagatagaag |
42306979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 51571484 - 51571445
Alignment:
| Q |
249 |
tcataacttgtcaactggttcaattccaaggagatagaag |
288 |
Q |
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| T |
51571484 |
tcataacttgtaaactggatcaattccaaggagatagaag |
51571445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 47971560 - 47971597
Alignment:
| Q |
251 |
ataacttgtcaactggttcaattccaaggagatagaag |
288 |
Q |
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| T |
47971560 |
ataacttgtaaactggatcaattccaaggagatagaag |
47971597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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