View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_low_116 (Length: 299)

Name: NF19530_low_116
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_low_116
NF19530_low_116
[»] chr4 (8 HSPs)
chr4 (93-280)||(15666522-15666711)
chr4 (93-280)||(46109068-46109257)
chr4 (93-280)||(52772350-52772539)
chr4 (93-280)||(1717235-1717423)
chr4 (96-280)||(50390832-50391018)
chr4 (93-280)||(52605991-52606179)
chr4 (93-183)||(46632537-46632629)
chr4 (95-143)||(34413223-34413271)
[»] chr1 (14 HSPs)
chr1 (93-280)||(9614566-9614755)
chr1 (93-280)||(3800386-3800575)
chr1 (93-280)||(51561999-51562188)
chr1 (93-280)||(38929097-38929284)
chr1 (159-280)||(23860626-23860747)
chr1 (187-280)||(7860710-7860803)
chr1 (187-280)||(36834845-36834938)
chr1 (187-280)||(26246353-26246447)
chr1 (187-280)||(47778816-47778909)
chr1 (93-156)||(23860814-23860877)
chr1 (96-156)||(36834645-36834705)
chr1 (93-156)||(26246150-26246213)
chr1 (93-156)||(7860969-7861032)
chr1 (93-156)||(47779049-47779112)
[»] chr7 (6 HSPs)
chr7 (93-280)||(34592944-34593133)
chr7 (93-280)||(47879943-47880132)
chr7 (93-280)||(48384844-48385033)
chr7 (93-280)||(45110781-45110969)
chr7 (93-280)||(29712863-29713045)
chr7 (187-280)||(45487174-45487266)
[»] chr5 (12 HSPs)
chr5 (93-280)||(10862746-10862935)
chr5 (93-280)||(5712943-5713132)
chr5 (93-280)||(23616204-23616392)
chr5 (93-280)||(23847601-23847789)
chr5 (178-280)||(35467651-35467753)
chr5 (187-280)||(10831645-10831738)
chr5 (187-280)||(10830939-10831032)
chr5 (187-280)||(10832803-10832896)
chr5 (93-156)||(10831192-10831255)
chr5 (93-156)||(10833286-10833349)
chr5 (93-156)||(35467828-35467891)
chr5 (1-53)||(1445506-1445558)
[»] chr3 (8 HSPs)
chr3 (93-279)||(41331799-41331987)
chr3 (93-280)||(49615796-49615984)
chr3 (93-277)||(34022217-34022402)
chr3 (187-280)||(43020481-43020574)
chr3 (187-280)||(51057876-51057969)
chr3 (99-210)||(41993921-41994034)
chr3 (93-156)||(51058109-51058172)
chr3 (93-156)||(43020714-43020777)
[»] chr8 (4 HSPs)
chr8 (93-280)||(16847853-16848042)
chr8 (93-280)||(29410982-29411170)
chr8 (187-280)||(27594100-27594193)
chr8 (93-156)||(27592566-27592629)
[»] chr6 (4 HSPs)
chr6 (93-280)||(13853864-13854052)
chr6 (118-280)||(5384682-5384846)
chr6 (159-280)||(1251752-1251873)
chr6 (93-156)||(1251940-1252003)
[»] chr2 (2 HSPs)
chr2 (174-280)||(8740857-8740962)
chr2 (93-156)||(8740723-8740786)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 15666711 - 15666522
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||||||    
T  15666711 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactatttcaattttaccctatctccatgagttcaaaagtcactttcat 15666612  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15666611 taattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattg 15666522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 46109068 - 46109257
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |  |||| |||||||||||||||||||||||||||    
T  46109068 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccctatctccatgagttcaaaagtcactttcat 46109167  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  46109168 taattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcatttttttaattg 46109257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 52772350 - 52772539
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |  |||| ||| |||||||||||||||||||||||    
T  52772350 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccctatctctatgagttcaaaagtcactttcat 52772449  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52772450 taattattactaaaacatgacaaggacaaaattgaaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattg 52772539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 1717235 - 1717423
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaat--tatcctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||| |||    
T  1717235 ttgtggtctcaaatgtaagaaaaagtatagtaaaatcaacctaataaatgctactattccaatgttatcctacctccatgaattcaaaagtcactt-cat 1717333  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1717334 taattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattg 1717423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 96 - 280
Target Start/End: Original strand, 50390832 - 50391018
Alignment:
Q  96 tggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcattaa 193  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |  |||| |||||||||||||||||||||||| |||||    
T  50390832 tggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccctatctccatgagttcaaaagtcacttttattaa 50390931  T
Q  194 ttattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||| ||||||||||||||| |||||| || |||||||||||||| ||||||||||||||||||||||||||||||    
T  50390932 ttattactaaaacataacaagggcaaaattggaaagttatacattttttaacatgatttcaatgtaatcaattcattttcttaattg 50391018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 52606179 - 52605991
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||| |  || | |||||||||||||| ||| ||||||||    
T  52606179 ttgtggtctcaaatgtaagaaaaagtatagtaaaaacaacctaataaatgctactattccaattttaccccatctccatgagttcaagagttactttcat 52606080  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||||||| ||||| |||||||    
T  52606079 taattattactaaaacatgacaagggcaaaattaaaaaattgta-cttttttaacatgacttcaatgtaatcaatttatttttttaattg 52605991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 46632537 - 46632629
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaa--ttatcctacctccatgagttcaaaagtca 183  Q
    ||||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||| |||  ||| |||||||||||||||||||||||||    
T  46632537 ttgtggtttcaaatgtaaaaaaaaatatagtaaaaacaacctaataaatgctactattccaatgttaccctacctccatgagttcaaaagtca 46632629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 34413223 - 34413271
Alignment:
Q  95 gtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgc 143  Q
    ||||||||| || ||||||||||||||||||||  |||||| |||||||    
T  34413223 gtggtctcaaatataagaaaaaatatagtaaaatgaacctattaaatgc 34413271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 9614566 - 9614755
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt--atcctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||  |||||| |||||||||||||||||||||||||||    
T  9614566 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttatcctatctccatgagttcaaaagtcactttcat 9614665  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  9614666 taattattactaaaacatgacaagggcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatcaattcatttttttaattg 9614755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 3800386 - 3800575
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |  |||| |||||||||||||||||||||||||||    
T  3800386 ttgtggtctcaaatgtaagaaaaaatatagtaaaagcaacctaataaatgctactattccaattttaccctatctccatgagttcaaaagtcactttcat 3800485  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |||||||||||||    
T  3800486 taattattactaaaacatgacaagggcaaaattgaaaagttgtacattttttaatatgatttcaatgtaatcaatttattttcttaattg 3800575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 51561999 - 51562188
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||| |  |||| |||||||||||||||||||||||||||    
T  51561999 ttgtggtctcaaatgtaagaaaaagtatagtataagcaacctaataaatgctactattccaattttaccctatctccatgagttcaaaagtcactttcat 51562098  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51562099 taattattattaaaacatgacaagggcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattg 51562188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 38929097 - 38929284
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaa--ttatcctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||  ||| || | |||||||||||||| ||||||||||||    
T  38929097 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccccatctccatgagttcaagagtcactttcat 38929196  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  38929197 taattattactaaaacatgacaa-ggcaaaattgaaaagttgta-cttttttaacatgacttcaatgtaatcaattcattttcttaattg 38929284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 23860747 - 23860626
Alignment:
Q  159 cctacctccatgagttcaaaagtcactttcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgt 258  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  23860747 cctatctccatgagttcaaaagtcactttcattaattattactaaaacatgacaagggcaaaattgaaaagttgtacattttttaacatgtcttcaatgt 23860648  T
Q  259 aatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||    
T  23860647 aatcaattcattttcttaattg 23860626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 7860803 - 7860710
Alignment:
Q  187 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  7860803 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatcaattcatttttttaattg 7860710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 36834845 - 36834938
Alignment:
Q  187 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36834845 tcattaattattactaaaacatgacaagggtaaaattggaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 36834938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 26246353 - 26246447
Alignment:
Q  187 tcattaattattactaaaacatgacaagggcaaaattg-aaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26246353 tcattaattattactaaaacatgacaagggcaaaattggaaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattg 26246447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 47778909 - 47778816
Alignment:
Q  187 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  47778909 tcattaattattactaaaacatgacaaaggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcatttttttaattg 47778816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 23860877 - 23860814
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  23860877 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatt 23860814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 36834645 - 36834705
Alignment:
Q  96 tggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  36834645 tggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatt 36834705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 26246150 - 26246213
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  26246150 ttgtgatctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatt 26246213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 7861032 - 7860969
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| ||| |||| |||||    
T  7861032 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatactattattccaatt 7860969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 47779112 - 47779049
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||||||||| |||||||||||| ||||||||||  ||||||||||||||||||||| |||||    
T  47779112 ttgtggtctcaaatgtaagaaaaagtatagtaaaaataacctaataaatgctactattccaatt 47779049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 34592944 - 34593133
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaat--tatcctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||  || |||||||||||||| |||||||||| ||||||    
T  34592944 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatgttaccctacctccatgaggtcaaaagtcattttcat 34593043  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593044 taattattactaaatcatgacaagggcaaaattggaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 34593133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 47880132 - 47879943
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattatcc--tacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |  || |||||||||||||||||||||||||||    
T  47880132 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccttatctccatgagttcaaaagtcactttcat 47880033  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47880032 taattattactaaaacatgacaagggcaagattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattg 47879943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 48385033 - 48384844
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaat--tatcctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||  || |||| |||||||||||||||||||||||||||    
T  48385033 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatgttaccctatctccatgagttcaaaagtcactttcat 48384934  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| |||||||    
T  48384933 taattattactaaaacatgacaagggcaaaattgaaaagttgtacattttttatcatgacttcaatgtaaccaattcatttttttaattg 48384844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 45110969 - 45110781
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |  || | |||||||||||||| ||||||||||||    
T  45110969 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccccatctccatgagttcaagagtcactttcat 45110870  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  45110869 taattattactaaaacatgacaagggcaaaattgaaaagttgta-cttttttaacatgacttcaatgtaatcaattcattttcttaattg 45110781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 29712863 - 29713045
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt--atcctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||  |||| | |||||||||||||||||||||||||||    
T  29712863 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttatcccatctccatgagttcaaaagtcactttcat 29712962  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||      ||||||||| ||||||||||||||||    
T  29712963 taattattactaaaacatgacaagggcaaaattggaaagttgta-cttttttaacatg------atgtaatcatttcattttcttaattg 29713045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 45487266 - 45487174
Alignment:
Q  187 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  45487266 tcattaattattactaaaacatgagaagggcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatc-attcattttcttaattg 45487174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 10862935 - 10862746
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaat--tatcctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||||||||||||||||    
T  10862935 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatgttatcctatctccatgagttcaaaagtcactttcat 10862836  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  10862835 taattattactaaaacatgacaagggcaaaattggaaagttgtacattttttatcatgatttcaatgtaatcaattcattttcttaattg 10862746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 5713132 - 5712943
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |  |||| |||||||||||||||||||||||| ||    
T  5713132 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccctatctccatgagttcaaaagtcacttttat 5713033  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||||||| |||||||    
T  5713032 taattattactaaaacatgacaagggcaaaattagaaagttgtacattttttaacatgatttcaatgtaatcaattcatttttttaattg 5712943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 23616392 - 23616204
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||| |  || | |||||||||||||| ||||||||||||    
T  23616392 ttgtggtctcaaatgtaagaaaaagtatagtaaaaacaacctaataaatgctactattccaattttaccccatctccatgagttcaagagtcactttcat 23616293  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  23616292 taattattactaaaacatgacaagggcaaaattgaaaagttgta-cttttttaacatgacttcaatgtaatcaattcattttcttaattg 23616204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 93 - 280
Target Start/End: Complemental strand, 23847789 - 23847601
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||| |  || | |||||||||||||| ||||||||||||    
T  23847789 ttgtggtctcaaatgtaagaaaaagtatagtaaaaacaacctaataaatgctactattccaattttaccccatctccatgagttcaagagtcactttcat 23847690  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  23847689 taattattactaaaacatgacaagggcaaaattgaaaagttgta-cttttttaacatgacttcaatgtaatcaattcattttcttaattg 23847601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 35467753 - 35467651
Alignment:
Q  178 aagtcactttcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35467753 aagtcactttcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaa 35467654  T
Q  278 ttg 280  Q
    |||    
T  35467653 ttg 35467651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 10831645 - 10831738
Alignment:
Q  187 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10831645 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattg 10831738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 10831032 - 10830939
Alignment:
Q  187 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  10831032 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacataacttcaatgtaatcaattcattttcttaattg 10830939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 10832896 - 10832803
Alignment:
Q  187 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10832896 tcattaattattactaaaacatgacaaggacaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattg 10832803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 10831192 - 10831255
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  10831192 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatt 10831255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 10833349 - 10833286
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  10833349 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatt 10833286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 35467891 - 35467828
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  35467891 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctattaaatgctactattccaatt 35467828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1445558 - 1445506
Alignment:
Q  1 ccagagctgtccaattctcagtcacataaaaattaaatttcctat-aagctgta 53  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  1445558 ccagagctgtccaattctcagtcacat-aaaattaaatttcctatcaagctgta 1445506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 93 - 279
Target Start/End: Complemental strand, 41331987 - 41331799
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |  |||| ||||||||||||||||| |||||||||    
T  41331987 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccctatctccatgagttcaaaagccactttcat 41331888  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaatt 279  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  41331887 taattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgatttcaatgtaatcaattcattttcttaatt 41331799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 49615796 - 49615984
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |  || | |||||||||||||| ||||||||||||    
T  49615796 ttgtggtctcaaatgtaagaaaaaatatagtaaaagcaacctaataaatgctactattccaattttaccccatctccatgagttcaagagtcactttcat 49615895  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||| | ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  49615896 taattattactaaaacatgacaatgacaaaattgaaaagttgta-cttttttaacatgacttcaatgtaatcaattcattttcttaattg 49615984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 93 - 277
Target Start/End: Original strand, 34022217 - 34022402
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    |||| |||||| |||||||||||| ||||||||||  ||||||||||||| ||||||| ||||| |  || | |||||||||||||| ||||||||||||    
T  34022217 ttgtagtctcaaatgtaagaaaaagtatagtaaaaataacctaataaatgttactattccaattttaccccatctccatgagttcaagagtcactttcat 34022316  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaa 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  34022317 taattattactaaaacatgacaagggcaaaattgaaaagttgta-cttttttaacatgacttcaatgtaatcaattcattttcttaa 34022402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 43020574 - 43020481
Alignment:
Q  187 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43020574 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 43020481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 187 - 280
Target Start/End: Complemental strand, 51057969 - 51057876
Alignment:
Q  187 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51057969 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 51057876  T

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Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 41993921 - 41994034
Alignment:
Q  99 tctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaat--tatcctacctccatgagttcaaaagtcactttcattaatta 196  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||  || ||||||| ||||||||||||||||||||||||||||||    
T  41993921 tctcaaatgtaagaaaaagtatagtaaaaacaacctaataaatgctactattccaatgttaccctaccttcatgagttcaaaagtcactttcattaatta 41994020  T
Q  197 ttactaaaacatga 210  Q
    ||| ||||||||||    
T  41994021 ttattaaaacatga 41994034  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 51058172 - 51058109
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  51058172 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatt 51058109  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 43020777 - 43020714
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  43020777 ttgtggtctcaaatgtaagaaaaagtatagtaaaagtaacctaataaatgctactattccaatt 43020714  T

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Target: chr8 (Bit Score: 139; Significance: 9e-73; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 16847853 - 16848042
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaat--tatcctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||  || |||| |||||||||||||||||||||||||||    
T  16847853 ttgtggtctcaaatgtaagaaaaagtatagtaaaaacaacctaataaatgctactattccaatgttaccctatctccatgagttcaaaagtcactttcat 16847952  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||||||||||||||||||    
T  16847953 taattattactaaaacatgacaagggcaaaattggaaagttgaacattttttatcatgacttcaatgtaatcaattcattttcttaattg 16848042  T

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Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 29410982 - 29411170
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |  |||| |||||||||||||||| ||||||||||    
T  29410982 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccctatctccatgagttcaaaa-tcactttcat 29411080  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||    
T  29411081 taattattactaaaacataacaagggcaaaattgaaaagttgtacattttttaacatgatttcaatgtaattaattcattttcttaattg 29411170  T

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Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 27594100 - 27594193
Alignment:
Q  187 tcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27594100 tcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattg 27594193  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 27592566 - 27592629
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||||||||| |||| ||||||| ||||||||||| || ||||||||||| |||||| |||||    
T  27592566 ttgtggtctcaaatgttagaaaaagtatagtaaaagtaaactaataaatgccactattccaatt 27592629  T

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Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 13853864 - 13854052
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcat 190  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |  || | ||| |||||||||||||||||||||||    
T  13853864 ttgtggtctcagatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaattttaccccatctctatgagttcaaaagtcactttcat 13853963  T
Q  191 taattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    |||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||| |||||||    
T  13853964 taattattactaaagcatgacaagggcaaaattgaaaagttgta-cttttttaacatgacttcgatgtaatcatttcatttttttaattg 13854052  T

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Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 118 - 280
Target Start/End: Complemental strand, 5384846 - 5384682
Alignment:
Q  118 tatagtaaaagcaacctaataaatgctactatttcaattat--cctacctccatgagttcaaaagtcactttcattaattattactaaaacatgacaagg 215  Q
    ||||||||||||||||||||||||||||||||| ||||| |  || |  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5384846 tatagtaaaagcaacctaataaatgctactattccaattttaaccaatatcaatgagttcaaaagtcactttcattaattattactaaaacatgacaagg 5384747  T
Q  216 gcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttcttaattg 280  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5384746 gcaaaattgaaaagttgtacattttttaacatgacttcaatgtaatcaattcattttcttaattg 5384682  T

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Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 1251873 - 1251752
Alignment:
Q  159 cctacctccatgagttcaaaagtcactttcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgt 258  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  1251873 cctatctccatgagttcaaaagtcactttcattaattattactaaaacatgacaagggcaaaattggaaagttgtacattttttaacatgacttcaatgt 1251774  T
Q  259 aatcaattcattttcttaattg 280  Q
    ||||||||||||||||||||||    
T  1251773 aatcaattcattttcttaattg 1251752  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 1252003 - 1251940
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  1252003 ttgtggtctcaaatgtaagaaaaagtatagtaaaagcaacctaataaatgctactattccaatt 1251940  T

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Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 174 - 280
Target Start/End: Original strand, 8740857 - 8740962
Alignment:
Q  174 tcaaaagtcactttcattaattattactaaaacatgacaagggcaaaattgaaaagttgtatattttttaacatgacttcaatgtaatcaattcattttc 273  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  8740857 tcaaaagtcactttcattaattattactaaaatatgacaagggcaaaattggaaagttgtaca-tttttaacatgacttcaatgtaatcaattcattttc 8740955  T
Q  274 ttaattg 280  Q
    |||||||    
T  8740956 ttaattg 8740962  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 8740723 - 8740786
Alignment:
Q  93 ttgtggtctcagatgtaagaaaaaatatagtaaaagcaacctaataaatgctactatttcaatt 156  Q
    ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  8740723 ttgtggtctcaaatataagaaaaagtatagtaaaagcaacctaataaatgctactattccaatt 8740786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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