View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_119 (Length: 297)
Name: NF19530_low_119
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_119 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 17717468 - 17717215
Alignment:
| Q |
30 |
tttcaagctcttcggtggagacattgatgagtactataaggtctttaatctgatcattcaagtaattgataagggtgatggcaatggagctgcaaaatgg |
129 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
17717468 |
tttcaagctcttcggtggagacattgatgagcactataaggtctttaatttgatcattcaagtaattgataatggtgatggcactggagctgcaaaatgg |
17717369 |
T |
|
| Q |
130 |
actgttgaatatgagaagatcaatgaggatattgaccctccaaatggctggatggacttactaggcaaagtcactcgagaagttgatgctcatcttgtca |
229 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17717368 |
actgttgaatatcagaagatcaatgaggatattgacccaccaaatggctggatggacttactaggcaaagtcactcgagaagttgatgctcatcttgtca |
17717269 |
T |
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| Q |
230 |
aaggcacaaatatagctctataagtcataaagaaagtaacaaatatgttgtaat |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17717268 |
aaggcacaaatatagctctataagtcataaagaaagtaacaaatatgttgtaat |
17717215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 17780039 - 17779887
Alignment:
| Q |
26 |
tcattttcaagctcttcggtggagacattgatgagtactataaggtctttaatctgatcattcaagtaattgataagggtgatggcaatggagctgcaaa |
125 |
Q |
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|||||||||||||||| |||||||| ||||||||| |||| ||||||||||| || ||| || |||||||||||||||||||||||| || || | || |
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| T |
17780039 |
tcattttcaagctctttggtggagatattgatgagcactacaaggtctttaagcttatccttgaagtaattgataagggtgatggcactgctgcatctaa |
17779940 |
T |
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| Q |
126 |
atggactgttgaatatgagaagatcaatgaggatattgaccctccaaatggct |
178 |
Q |
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| T |
17779939 |
atggacagttgaatatgagaagatcaatgaggacattgaccctccaaatggct |
17779887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 17801012 - 17800815
Alignment:
| Q |
33 |
caagctcttcggtggagacattgatgagtactataaggtctttaatctgatcattcaagtaattgataagggtgatggcaatggagctgcaaaatggact |
132 |
Q |
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||||||||| |||||||| ||||||||| ||||||||| |||||| || |||||| |||||||||||||||||||||| | | || | ||||||||| |
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| T |
17801012 |
caagctctttggtggagatattgatgagcactataaggactttaagctcatcattgaagtaattgataagggtgatgggacttctgcagttaaatggact |
17800913 |
T |
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| Q |
133 |
gttgaatatgagaagatcaatgaggatattgaccctccaaatggctggatggacttac-taggcaaagtcactcgagaagttgatgctcatcttgtcaa |
230 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| || ||||| ||| |||| ||||||||||||||||||| |
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| T |
17800912 |
gttgaatatgtgaagatcaacgaggatattgaccctccaaatggctggatgga-ttacttatgcaaatgtactagagatattgatgctcatcttgtcaa |
17800815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 17691796 - 17691599
Alignment:
| Q |
33 |
caagctcttcggtggagacattgatgagtactataaggtctttaatctgatcattcaagtaattgataagggtgatggcaatggagctgcaaaatggact |
132 |
Q |
| |
|
|||| |||| |||| ||| ||||||||| | |||||||||||||| || |||||| ||||||||||||||| |||||||| | ||| ||||||||| |
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| T |
17691796 |
caagatctttggtgaagaaattgatgagcaatataaggtctttaagctcatcattgaagtaattgataaggctgatggcactacttctgttaaatggact |
17691697 |
T |
|
| Q |
133 |
gttgaatatgagaagatcaatgaggatattgaccctccaaatggctggatggacttactaggcaaagtcactcgagaagttgatgctcatcttgtcaa |
230 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| | |||||||| | || ||||| ||||||||| ||||||||||||||||||| |
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| T |
17691696 |
gttgaatatgagaagatcaatgaggatattgaacctccaaatagttggatggaataccttagcaaatgcactcgagacattgatgctcatcttgtcaa |
17691599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 17822324 - 17822167
Alignment:
| Q |
30 |
tttcaagctcttcggtggagacattgatgagtactataaggtctttaatctgatcattcaagtaattgataagggtgatggcaatggagctgcaaaatgg |
129 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||||||||||||||| || ||| || ||||||||||||| | || ||| |||| |||| |||||| |
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| T |
17822324 |
tttcaagctctttggtggagatattgatgaacactataaggtctttaagctcatccttgaagtaattgataaagctggtggaaatgctgctgttaaatgg |
17822225 |
T |
|
| Q |
130 |
actgttgaatatgagaagatcaatgaggatattgaccctccaaatggctggatggact |
187 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |
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| T |
17822224 |
actattgaatatgagaaaatcaatgaggatattgatcctccaaatggctatatggact |
17822167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 17813446 - 17813292
Alignment:
| Q |
33 |
caagctcttcggtggagacattgatgagtactataaggtctttaatctgatcattcaagtaattgataagggtgatggcaatggagctgcaaaatggact |
132 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||||||||| ||||| || || ||| || |||||||||| |||| | | || || ||||||||| |
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| T |
17813446 |
caagctcttcggtggagatattggtgagaactataaggattttaaactcattattgaaataattgataaaagtgacagtagtgctgccattaaatggact |
17813347 |
T |
|
| Q |
133 |
gttgaatatgagaagatcaatgaggatattgaccctccaaatggctggatggact |
187 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
17813346 |
attgaatatgtgaagatcaatgaggatattgacgctcctaatggctggatggact |
17813292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 17789036 - 17788978
Alignment:
| Q |
225 |
tgtcaaaggcacaaatatagctctataagtcataaagaaagtaacaaatatgttgtaat |
283 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
17789036 |
tgtcaaaggcgcaaatatagcactataagtcataaagaaagtaacaagtatgttgtaat |
17788978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 17817542 - 17817438
Alignment:
| Q |
126 |
atggactgttgaatatgagaagatcaatgaggatattgaccctccaaatggctggatggacttactaggcaaagtcactcgagaagttgatgctcatctt |
225 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||||| |||| |||||||||||||||| || ||||| |||| |||| |||||| ||||||| |
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| T |
17817542 |
atggactattgattatgagaagaaaaatgaggatattgatactcccaatggctggatggactaccttagcaaatgcactagagatattgatggtcatctt |
17817443 |
T |
|
| Q |
226 |
gtcaa |
230 |
Q |
| |
|
||||| |
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|
| T |
17817442 |
gtcaa |
17817438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 17843406 - 17843279
Alignment:
| Q |
126 |
atggactgttgaatatgagaagatcaatgaggatattgaccctccaaatggctggatggacttactaggcaaagtcactcgagaagttgatgctcatctt |
225 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||||||| |||| |||||||||||||||| || ||||| |||| |||| |||||| ||||||| |
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| T |
17843406 |
atggactattggttatgagaagaaaaatgaggatattgatactcccaatggctggatggactaccttagcaaatgcactagagatattgatggtcatctt |
17843307 |
T |
|
| Q |
226 |
gtcaaaggcacaaatatagctctataag |
253 |
Q |
| |
|
||||| || |||| |||||||||||| |
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|
| T |
17843306 |
gtcaagggggaaaatgtagctctataag |
17843279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 17920677 - 17920616
Alignment:
| Q |
126 |
atggactgttgaatatgagaagatcaatgaggatattgaccctccaaatggctggatggact |
187 |
Q |
| |
|
||||||| |||| |||||||||| ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
17920677 |
atggactattgattatgagaagaacaatgaggaagttgagactccaaatggctggatggact |
17920616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 17868936 - 17868808
Alignment:
| Q |
134 |
ttgaatatgagaagatcaatgaggatattgaccctccaaatggctggatggacttactaggcaaagtcactcgagaagttgatgctcatcttgtcaaagg |
233 |
Q |
| |
|
|||| |||||||||| |||||||||||||| |||||||||| |||||||| | || ||||| |||| |||| |||||| |||||||||||| || |
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| T |
17868936 |
ttgattatgagaagaataatgaggatattgatactccaaatggttggatggattaccttagcaaaagcactagagatattgatggtcatcttgtcaaggg |
17868837 |
T |
|
| Q |
234 |
cacaaatatagctctataagtcataaaga |
262 |
Q |
| |
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||| ||| ||||||||||||||||| |
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|
| T |
17868836 |
ggaaaaggtagttctataagtcataaaga |
17868808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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