View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_low_123 (Length: 292)

Name: NF19530_low_123
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_low_123
NF19530_low_123
[»] chr6 (2 HSPs)
chr6 (128-260)||(4140574-4140706)
chr6 (20-116)||(4141264-4141360)
[»] chr5 (1 HSPs)
chr5 (20-107)||(3855263-3855350)
[»] chr8 (1 HSPs)
chr8 (39-116)||(1882018-1882095)
[»] chr3 (1 HSPs)
chr3 (39-116)||(41541812-41541889)
[»] chr2 (1 HSPs)
chr2 (139-198)||(44636883-44636942)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 260
Target Start/End: Complemental strand, 4140706 - 4140574
Alignment:
Q  128 atttgtgaggagggcaaatatgagaggatgtgatgaagtatttcatccggtaaatcgctgatactgtctgtaccttttcttgttggtgccattgatagtt 227  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||    
T  4140706 atttgtgaggagggcaaaaatgagaggatgtgatggagtatttcatccggtaaatcgctgatcctgtctgttccttttcttgttggtgccatggatagtt 4140607  T
Q  228 aagtttctttctttattgattgaatgaaccaat 260  Q
    |||||||||||||| ||||||||||||| ||||    
T  4140606 aagtttctttctttgttgattgaatgaatcaat 4140574  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 4141360 - 4141264
Alignment:
Q  20 attatcatcattggtggtgacattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||    
T  4141360 attatcatcattggtggtgacattttttatgagcaaatcctcaagaagtggacatacagagagaatctgaataagatatttaagctttagaaaatga 4141264  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 3855263 - 3855350
Alignment:
Q  20 attatcatcattggtggtgacattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagcttt 107  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  3855263 attatcatcatgggtgctgacattttttatgagtaaatcctcgagaaatggacatacagagagaatcttaataagatatttaagcttt 3855350  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 1882095 - 1882018
Alignment:
Q  39 acattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga 116  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||| ||||    
T  1882095 acatttttgatgagtaaatcctcaagaagcggacatacagagagaatcttaataagaaattgaagctttagaaaatga 1882018  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 41541889 - 41541812
Alignment:
Q  39 acattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga 116  Q
    |||||||| |||||||||||||||||||| ||||||||  ||||||||||||||||| ||| ||||||| ||| ||||    
T  41541889 acatttttgatgagtaaatcctcaagaagcggacatacggagagaatcttaataagaaattgaagctttggaaaatga 41541812  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 44636883 - 44636942
Alignment:
Q  139 gggcaaatatgagaggatgtgatgaagtatttcatccggtaaatcgctgatactgtctgt 198  Q
    |||||||||||||||||||||||  | ||||||||| |||||||||||||| ||||||||    
T  44636883 gggcaaatatgagaggatgtgatatattatttcatcgggtaaatcgctgatcctgtctgt 44636942  T

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