View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_125 (Length: 291)
Name: NF19530_low_125
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_125 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 24907647 - 24907908
Alignment:
| Q |
7 |
tccaagaatataagaaataagattcatcataatgaatttaacccatgattccctttggaaccacatgtatcctaacaactaaatgataaatacatcatat |
106 |
Q |
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| T |
24907647 |
tccaacaatataagaaataagattcatcataatgaat------catgattccctttggaaccacatgtatcctaataactaaacgataaatacatcatat |
24907740 |
T |
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| Q |
107 |
accagaaacatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgac |
206 |
Q |
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| T |
24907741 |
accagaaacatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgac |
24907840 |
T |
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| Q |
207 |
atcgattttcatattttttgtgcttgattacttgagatgacgatgaaatctcattcaaagaaccactc |
274 |
Q |
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| T |
24907841 |
atcgattttcatattttttgtgcttgattacttgagatgacgatgaaatctcattcaaagaaccactc |
24907908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 24889949 - 24890207
Alignment:
| Q |
16 |
ataagaaataagattcatcataatgaatttaacccatgattccctttggaaccacatgtatcctaacaactaaat-gataaatacatcatataccagaaa |
114 |
Q |
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| T |
24889949 |
ataagaaataagattcatcataatatattta-cccattattccctttggaaccacatgtatcctaacaacaaaaaagataaatacatcacataccaaaag |
24890047 |
T |
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| Q |
115 |
catggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattt |
214 |
Q |
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| T |
24890048 |
tatgaacccaacatcatttgcaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgatgtcgattt |
24890147 |
T |
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| Q |
215 |
tcatattttttgtgcttgattacttgagatgacgatgaaatctcattcaaagaaccactc |
274 |
Q |
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| T |
24890148 |
tcatattttttgtgcttgattacttgagatgacgatgacatctcattcaaagaaccactc |
24890207 |
T |
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