View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_127 (Length: 289)
Name: NF19530_low_127
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_127 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 44235761 - 44236028
Alignment:
| Q |
14 |
taaccaaccatgaccgatcaccaatttaaaagagacctgtccttttctttcaatcacaaatgcatggtcctaaatgacaccgtcaagtttatcacgtagc |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44235761 |
taaccaaccatgaccgatcaccaatttaaaagaaacctgtccttttctttcaatcacaaatgcatggtcctaaatgacaccgtcaaatttatcacgtagc |
44235860 |
T |
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| Q |
114 |
taaacattgctcgtaccaagatcttttgctgtgatatatatggtccttactccttaataacttctttttatttgaatttgaaagttagaggtgtgtgtcc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44235861 |
taaacattgctcgtaccaagatcttttgctgtgatatatatggtccttactccttaataacttctttttatttgaatttgaaagttagaggtgtgtgtcc |
44235960 |
T |
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| Q |
214 |
catcgttcggtaccacacaactttcagggaagaatacaaattagcacatggtatgtatgagaataatt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44235961 |
catcgttcggtaccacacaactttcagggaagaatacaaattagcacatggtatgtatgagaataatt |
44236028 |
T |
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