View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_128 (Length: 288)
Name: NF19530_low_128
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_128 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 50237397 - 50237122
Alignment:
| Q |
13 |
gagatgaagtaatgaatttagggaggtggagattaataagatggtgcaaatttgtttcatgctaatttgtgtaatttgatttcgtaactagtatttcccc |
112 |
Q |
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| T |
50237397 |
gagataaagtaatgaatttagggagctggagattaataagatggtgcaaatttgtgtcatgctaatttgtgtaatttgatttcgtaactagtatttcccc |
50237298 |
T |
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| Q |
113 |
aatatagtttctgcttctcaactttttcttaagcttgtttctctgtaaatacatcaacatctctacatgcttagaatatttctttttgcatattaaaaat |
212 |
Q |
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| T |
50237297 |
aatatagtttctgcttctcaactttttcttaagcctgtttctctgtaaatacatcaacatctctacatgcttagaatatttctttttgcatattaaaaat |
50237198 |
T |
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| Q |
213 |
ttataaagctaattcaaactgagtcatagagctactatcttcaaccaccacattaacaatcatatttatctgcaac |
288 |
Q |
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| T |
50237197 |
ttataaagctaattcaaactgagtcatagagctactatcttcaaccaccacattaacaatcatatttatctgcaac |
50237122 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 17279370 - 17279284
Alignment:
| Q |
59 |
caaatttgtttcatgctaatttgtgtaatttgatttcgtaactagtatttccccaatatagtttctgcttctcaactttttcttaagct |
147 |
Q |
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| T |
17279370 |
caaaattgtttcttgctaatttgtgtaa-ttgatttcataacaagtattttccaaat-tactttctgcatctcaactttatctgaagct |
17279284 |
T |
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