View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_129 (Length: 286)
Name: NF19530_low_129
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_129 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 42 - 284
Target Start/End: Complemental strand, 25639560 - 25639317
Alignment:
| Q |
42 |
ggaattggatttttgtttgtgcatctgatgtgttcatatctagcttcacattgctgatttgaaatggtgaagcagtaatgttttaaactaatttgatgtg |
141 |
Q |
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| T |
25639560 |
ggaattgaatttttgtttgtgcatctgatgtgttcatatctagcttcacattgttgatttgaaatggtgaagcagtaatgttttaaactaatttgatgtg |
25639461 |
T |
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| Q |
142 |
attcattatttctaaacaagttgaataatttgaaagagtatgaaaaacactagccatcatccatatttcgatactccagcctgcctcctcatcggtcgca |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25639460 |
attcattatttctaaacaagttgaataatttgaaagagtatgaaaaacactagccatcatccatatttcgatactccggcctgcctcctcatcggtcgca |
25639361 |
T |
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| Q |
242 |
-ctgcatccttctcatcggttgcgcccgcctcttcctcagtcgc |
284 |
Q |
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| T |
25639360 |
cctgcatccttctcatcggtcgcgcccgcctcttcctcagtcgc |
25639317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 37399048 - 37398939
Alignment:
| Q |
94 |
gctgatttgaaatggtgaagcagtaatgttttaaactaatttgatgtgattcattatt----tctaaacaagttgaataatttgaaagagtatgaaaaac |
189 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||||| ||| |||||||||||||| ||| |
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| T |
37399048 |
gctgttttgaaatggtgagacagtaatgttttaaactaatttgatgtgattcattattactatataaacaggttgaagaatgtgaaagagtatgaagaac |
37398949 |
T |
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| Q |
190 |
actagccatc |
199 |
Q |
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| T |
37398948 |
actagccatc |
37398939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 37399202 - 37399135
Alignment:
| Q |
16 |
attttgaaccgtagttgctgctgttaggaattggatttttgtttgtgcatctgatgtgttcatatctag |
84 |
Q |
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| T |
37399202 |
attttgaagcgtagttgttactgttttgaattggatttt-gtttgtgcatctggtgtgttcataactag |
37399135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 39829980 - 39830103
Alignment:
| Q |
91 |
attgctgatttgaaatggtgaagcagtaatgttttaaactaatttgatgtgattcattatttcta----aacaagttgaataatttgaaagagtatgaaa |
186 |
Q |
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||||||||||||||||||||| || ||||||| ||| ||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||||| |
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| T |
39829980 |
attgctgatttgaaatggtgagacaataatgttctaa-ctaatttgatgtgattcattattactatataaacaggttgaagaatttgaaagagtatgaag |
39830078 |
T |
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| Q |
187 |
aacactagccatcatccatatttcg |
211 |
Q |
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||||||||||||| |||| |||||| |
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| T |
39830079 |
aacactagccatcgtccacatttcg |
39830103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 42403812 - 42403764
Alignment:
| Q |
148 |
tatttctaaacaagttgaataatttgaaagagtatgaaaaacactagcc |
196 |
Q |
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|||| |||||||||||||| ||||||||| || ||||| |||||||||| |
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| T |
42403812 |
tattcctaaacaagttgaagaatttgaaaaagcatgaagaacactagcc |
42403764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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