View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_low_13 (Length: 571)

Name: NF19530_low_13
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_low_13
NF19530_low_13
[»] chr8 (4 HSPs)
chr8 (18-280)||(41481839-41482101)
chr8 (36-282)||(41485124-41485367)
chr8 (324-523)||(41482464-41482660)
chr8 (324-364)||(41485745-41485785)
[»] chr2 (4 HSPs)
chr2 (309-525)||(45385162-45385376)
chr2 (135-214)||(45385972-45386051)
chr2 (39-133)||(45386082-45386176)
chr2 (515-560)||(45384951-45384996)
[»] chr3 (9 HSPs)
chr3 (80-205)||(5701179-5701304)
chr3 (127-275)||(5697688-5697834)
chr3 (40-276)||(5736337-5736567)
chr3 (40-276)||(5773449-5773679)
chr3 (44-204)||(5694778-5694934)
chr3 (464-525)||(5796284-5796345)
chr3 (255-321)||(5697520-5697587)
chr3 (244-388)||(5699951-5700096)
chr3 (515-561)||(5796167-5796213)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 3e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 41481839 - 41482101
Alignment:
Q  18 agaacaaacgtacaacatatgtcatctgcttttgttgtcattgatgacatgttttcgcactctaaaatggtttctttatgggaagagttgtgaagccaca 117  Q
    ||||||||| |||| || ||||||||| ||||| ||| ||||| | ||||||||||| |||||| |||||||||||||| || | |||||||||||||||    
T  41481839 agaacaaacttacagcagatgtcatctacttttcttgacattggtcacatgttttcgtactctagaatggtttctttattggcaaagttgtgaagccaca 41481938  T
Q  118 ccccatactcacatgtattgcaataaccacaagattcacatctagttctattttgtgcttgttacttgggatgatttcagttttatgtgtaatataactt 217  Q
    || | || |||||||| ||||| ||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||||  |||| | ||||||| |||    
T  41481939 cctcgtaatcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgcttgggatgatttcagaattatttataatatagctt 41482038  T
Q  218 atgttgtttgttagtggaaaaattcactagatgttacataccaagaaattagagaaaaataga 280  Q
    |||| ||||||| ||||||| ||||||||| |||| | ||||||||| |||||||||||||||    
T  41482039 atgtggtttgttggtggaaagattcactagctgtttcttaccaagaagttagagaaaaataga 41482101  T

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Target: chr8; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 36 - 282
Target Start/End: Original strand, 41485124 - 41485367
Alignment:
Q  36 atgtcatctgcttttgttgtcattgatgacatgttttcgcactctaaaatggtttctttatgggaagagttgtgaagccacaccccatactcacatgtat 135  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||| |||| |||||||| |    
T  41485124 atgtcatctacttttcttgtcattggtgacatgttttcgcactctagaatggtttctttatgggcagaatagtgaagccacacctcatattcacatgttt 41485223  T
Q  136 tgcaataaccacaagattcacatctagttctattttgtgcttgttacttgggatgatttcagttttatgtgtaatataacttatgttgtttgttagtgga 235  Q
    |||   ||||||||||||| || ||||| |||||  ||||||||| || ||||| ||||||||||||||| ||||||| ||||| | |||||||  ||||    
T  41485224 tgctggaaccacaagattcgcaactagtactattccgtgcttgttgctagggataatttcagttttatgtataatatagcttatttggtttgttgatgga 41485323  T
Q  236 aaaattcactagatgttacataccaagaaattagagaaaaatagaga 282  Q
    |||||||||||   ||| | ||||||||| |||||||||||||||||    
T  41485324 aaaattcacta---gtttcttaccaagaagttagagaaaaatagaga 41485367  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 324 - 523
Target Start/End: Original strand, 41482464 - 41482660
Alignment:
Q  324 ttatttagttttgataaattagtcagtaacattccctgttcgatttgtaaaaggaaacaaagttaggaaaattgaggcttatccgttgctggacggactg 423  Q
    |||||| ||||||||||||||||||||||||||| |||||| ||||| |||||||| || ||||||  |||||||||||||||||||||||   ||||||    
T  41482464 ttatttggttttgataaattagtcagtaacattctctgttc-atttgcaaaaggaagcagagttag--aaattgaggcttatccgttgctgagtggactg 41482560  T
Q  424 acatcgaagactagta-ctctaaatttagaatgtgttcattgattgaaaagcagacttgtttccctgactaggagagttccaaagataatgttcatttta 522  Q
    ||||  ||||  |||| |||||||||| ||| |||||  ||||||||||| |||||||| ||||||||||||||||||||  ||| | ||||||||||||    
T  41482561 acatataagagcagtatctctaaatttggaacgtgtttgttgattgaaaaacagacttg-ttccctgactaggagagttcagaaggtgatgttcatttta 41482659  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 41485745 - 41485785
Alignment:
Q  324 ttatttagttttgataaattagtcagtaacattccctgttc 364  Q
    |||||| |||||||||||||||||| |||||||| ||||||    
T  41485745 ttatttggttttgataaattagtcactaacattctctgttc 41485785  T

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Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 309 - 525
Target Start/End: Complemental strand, 45385376 - 45385162
Alignment:
Q  309 tcttaatattattgtttatttagttttgataaattagtcagtaacattccctgttcgatttgtaaaaggaaacaaagttaggaaaattgaggcttatccg 408  Q
    |||| |||||||||||||||| ||||| | ||||| ||||||||||||| || ||| ||||| |||||| | || ||||||  ||||||||||||||||     
T  45385376 tcttcatattattgtttatttggttttcacaaatttgtcagtaacattctctattctatttgcaaaaggcagcagagttag--aaattgaggcttatcca 45385279  T
Q  409 ttgctggacggactgacatcgaagactagtactctaaatttagaatgtgttcattgattgaaaagcagacttgtttccctgactaggagagttccaaaga 508  Q
    |||||||| ||||||||||||||||  |||||||||||||| ||| |||||| | | |||||||| ||||||||| ||||||||||||||||||  |||     
T  45385278 ttgctggatggactgacatcgaagatcagtactctaaatttggaacgtgttcgtcgtttgaaaagtagacttgttgccctgactaggagagttcagaagg 45385179  T
Q  509 taatgttcattttatgg 525  Q
    | |||||||||||||||    
T  45385178 tgatgttcattttatgg 45385162  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 45386051 - 45385972
Alignment:
Q  135 ttgcaataaccacaagattcacatctagttctattttgtgcttgttacttgggatgatttcagttttatgtgtaatataa 214  Q
    ||||| ||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  45386051 ttgcagtaaccacaagattcacaactagtactattttgtacttgttgcttgggatgatttcagttttatgtataatataa 45385972  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 45386176 - 45386082
Alignment:
Q  39 tcatctgcttttgttgtcattgatgacatgttttcgcactctaaaatggtttctttatgggaagagttgtgaagccacaccccatactcacatgt 133  Q
    |||||| ||||| ||||||||| || ||||||||||||||||| |||||||||||||| || |||||||||||||||| || |||| ||||||||    
T  45386176 tcatctacttttcttgtcattggtggcatgttttcgcactctagaatggtttctttataggcagagttgtgaagccacgcctcatattcacatgt 45386082  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 515 - 560
Target Start/End: Complemental strand, 45384996 - 45384951
Alignment:
Q  515 tcattttatggagatcagtctctggttggatataaaccagttgatg 560  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||    
T  45384996 tcattttatggagatcagtctatggttggatatagaccggttgatg 45384951  T

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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 5701304 - 5701179
Alignment:
Q  80 taaaatggtttctttatgggaagagttgtgaagccacaccccatactcacatgtattgcaataaccacaagattcacatctagttctattttgtgcttgt 179  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||||||||||| |||||  |||||||||||||||  |||||||||| | ||||||||    
T  5701304 taaaatggtttcttcatgggaagtgttgtgaagccacacctcatactcacatgttttgcagaaaccacaagattcacgactagttctatctggtgcttgt 5701205  T
Q  180 tacttgggatgatttcagttttatgt 205  Q
    |  ||| |||||||||||||||||||    
T  5701204 tgtttgagatgatttcagttttatgt 5701179  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 127 - 275
Target Start/End: Complemental strand, 5697834 - 5697688
Alignment:
Q  127 cacatgtattgcaataaccacaagattcacatctagttctattttgtgcttgttacttgggatgatttcagttttatgtgtaatataacttatgttgttt 226  Q
    ||||||| ||||| ||||| ||| ||||||| ||||| |||||||||||||||| |||| ||| ||||||||||||||  ||||||  ||||||| ||||    
T  5697834 cacatgttttgcattaaccccaaaattcacaactagtactattttgtgcttgttgcttgagataatttcagttttatgaataatat--cttatgtagttt 5697737  T
Q  227 gttagtggaaaaattcactagatgttacataccaagaaattagagaaaa 275  Q
    ||| |||||||||||| |||| |||| | ||||||  ||||||||||||    
T  5697736 gttggtggaaaaattccctagttgtttcttaccaattaattagagaaaa 5697688  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 40 - 276
Target Start/End: Complemental strand, 5736567 - 5736337
Alignment:
Q  40 catctgcttttgttgtcattgatgacatgttttcgcactctaaaatggtttctttatgggaagagttgtgaagccacaccccatactcacatgtattgca 139  Q
    ||||||||||| ||||||||| ||| || ||||| |  |||| ||| ||||||||||||    ||||  ||||||| ||  |||  |||||||| |||||    
T  5736567 catctgcttttcttgtcattggtgatatattttcaccatctacaattgtttctttatgg----agttacgaagccaaacttcattttcacatgttttgca 5736472  T
Q  140 ataaccacaagattcacatctagttctattttgtgcttgttacttgggatgatttcagttttatgtgtaatataacttatgttgtttgttagtggaaaaa 239  Q
    ||||||  || ||||||| ||||| ||||||| |||||||| |||| ||| ||||||||||||||  ||||||  |||||||  |||||| || ||||||    
T  5736471 ataaccctaaaattcacaactagtactattttttgcttgtttcttgagataatttcagttttatgaataatat--cttatgtattttgttggttgaaaaa 5736374  T
Q  240 ttcactagatgttacataccaagaaattagagaaaaa 276  Q
    |||  ||| |||| | ||||||  |||||||||||||    
T  5736373 ttcgttagttgtttcttaccaattaattagagaaaaa 5736337  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 40 - 276
Target Start/End: Complemental strand, 5773679 - 5773449
Alignment:
Q  40 catctgcttttgttgtcattgatgacatgttttcgcactctaaaatggtttctttatgggaagagttgtgaagccacaccccatactcacatgtattgca 139  Q
    ||||||||||| ||||||||| ||| || ||||| |  |||| ||| ||||||||||||    ||||  ||||||| ||  |||  |||||||| |||||    
T  5773679 catctgcttttcttgtcattggtgatatattttcaccatctacaattgtttctttatgg----agttacgaagccaaacttcattttcacatgttttgca 5773584  T
Q  140 ataaccacaagattcacatctagttctattttgtgcttgttacttgggatgatttcagttttatgtgtaatataacttatgttgtttgttagtggaaaaa 239  Q
    ||||||  || ||||||| ||||| ||||||| |||||||| |||| ||| ||||||||||||||  ||||||  |||||||  |||||| || ||||||    
T  5773583 ataaccctaaaattcacaactagtactattttttgcttgtttcttgagataatttcagttttatgaataatat--cttatgtattttgttggttgaaaaa 5773486  T
Q  240 ttcactagatgttacataccaagaaattagagaaaaa 276  Q
    |||  ||| |||| | ||||||  |||||||||||||    
T  5773485 ttcgttagttgtttcttaccaattaattagagaaaaa 5773449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 5694934 - 5694778
Alignment:
Q  44 tgcttttgttgtcattgatgacatgttttcgcactctaaaatggtttctttatgggaagagttgtgaagccacaccccatactcacatgtattgcaataa 143  Q
    ||||||| ||||||||| ||| ||||||||||  |||| ||| ||||||||||||    ||||  ||||||||||  |||  |||||||| |||||||||    
T  5694934 tgcttttcttgtcattggtgatatgttttcgccatctacaattgtttctttatgg----agttacgaagccacacttcattttcacatgttttgcaataa 5694839  T
Q  144 ccacaagattcacatctagttctattttgtgcttgttacttgggatgatttcagttttatg 204  Q
    ||  || ||||||| ||||| ||||||| |||||||| |||| ||| ||||||||||||||    
T  5694838 ccctaaaattcacaactagtactattttttgcttgttgcttgagataatttcagttttatg 5694778  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 464 - 525
Target Start/End: Complemental strand, 5796345 - 5796284
Alignment:
Q  464 gattgaaaagcagacttgtttccctgactaggagagttccaaagataatgttcattttatgg 525  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  5796345 gattgaaaagcagacttgtttccctgactaggagagttccggagataatgatcattttatgg 5796284  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 5697587 - 5697520
Alignment:
Q  255 ataccaagaaattagagaaaaatagagattact-cttctgttgcttaagatattttcttaatattatt 321  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||||||||    
T  5697587 ataccaagaaattagagaaaaatacagattactccttttgttgcttaagatattctcttaatattatt 5697520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 244 - 388
Target Start/End: Complemental strand, 5700096 - 5699951
Alignment:
Q  244 ctagatgttacataccaagaaattagagaaaaatagagattactcttctgttgcttaagatattt-tcttaatattattgtttatttagttttgataaat 342  Q
    |||| |||||| ||| |||||||||||||||||| ||||||||| |||| |||||| |||||||| ||||  ||||||||| ||||| |||||||| ||     
T  5700096 ctagttgttacttactaagaaattagagaaaaattgagattactattcttttgcttgagatatttctcttcgtattattgtatatttggttttgattaac 5699997  T
Q  343 tagtcagtaacattccctgttcgatttgtaaaaggaaacaaagtta 388  Q
    ||| |  ||| |||| || ||  ||||| |||||||||| ||||||    
T  5699996 tagcctctaatattctctatttaatttgcaaaaggaaacgaagtta 5699951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 515 - 561
Target Start/End: Complemental strand, 5796213 - 5796167
Alignment:
Q  515 tcattttatggagatcagtctctggttggatataaaccagttgatga 561  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  5796213 tcattttatggagatcagtctctggttggatatagaccagttgatga 5796167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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