View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_133 (Length: 281)
Name: NF19530_low_133
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_133 |
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| [»] scaffold0164 (2 HSPs) |
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Alignment Details
Target: scaffold0164 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 131 - 277
Target Start/End: Original strand, 32612 - 32758
Alignment:
| Q |
131 |
aaatggtctttgagaactatatacaatattgtcgcttctcacttcccataattgcacctttttctcacttcaagtaattcacgtttctttgttttctata |
230 |
Q |
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| T |
32612 |
aaatggtctttgagaactatatacaatattgtcgcttctcacttcccataattgcacctttttctcacttcaagtaattcacgtttatttgttgtctata |
32711 |
T |
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| Q |
231 |
acccctcattccttgacttaccattttccgtccacttcatctctctc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
32712 |
acccctcattccttgacttaccattttccgtccacttcctttctctc |
32758 |
T |
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Target: scaffold0164; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 13514 - 13630
Alignment:
| Q |
18 |
gttgatggaggatgtcctccataaggtctttaatttccttaccattatccttactcttctcttcttttcccgtcattcaattggctgacacataccatat |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13514 |
gttgatggaggatgtcctccataaggtttttaatttccttaccattatccttactcttctcttcttttcccgtcattcaattggctgacacataccatat |
13613 |
T |
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| Q |
118 |
taaaagaaaatgaaaat |
134 |
Q |
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||||||||||||||||| |
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| T |
13614 |
taaaagaaaatgaaaat |
13630 |
T |
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