View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_low_134 (Length: 279)

Name: NF19530_low_134
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_low_134
NF19530_low_134
[»] chr2 (4 HSPs)
chr2 (15-279)||(38344381-38344653)
chr2 (15-76)||(11129687-11129748)
chr2 (36-77)||(11842161-11842202)
chr2 (37-77)||(36343043-36343083)
[»] chr8 (4 HSPs)
chr8 (17-77)||(40439712-40439772)
chr8 (15-87)||(34944165-34944237)
chr8 (15-87)||(373703-373777)
chr8 (36-76)||(37288351-37288391)
[»] chr3 (2 HSPs)
chr3 (15-77)||(46879359-46879421)
chr3 (15-77)||(118813-118875)
[»] chr4 (2 HSPs)
chr4 (36-77)||(42170729-42170770)
chr4 (36-76)||(42380562-42380602)
[»] chr1 (1 HSPs)
chr1 (15-87)||(9001741-9001813)
[»] chr6 (1 HSPs)
chr6 (36-77)||(858340-858381)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 38344381 - 38344653
Alignment:
Q  15 attaagaaatgtagttgattgtgtatagaaaagagtaattgtgagttgatttacaaaaatatctctcattaatatattcatacaattttatgttcacaga 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38344381 attaagaaacgtagttgattgtgtatagaaaagagtaattgtgagttgatttacaaaaatatctctcattaatatattcatacaattttatgttcacaga 38344480  T
Q  115 caattttaaatttaatcaccaaaaaatttctttttccaaataattacatattacaagttgtgtttaagtattaaaggtctagtttacaa--------ata 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |     
T  38344481 caattttaaatttaatcaccaaaaaatttctttttccaaataattacatattacaagttgtgtttaagtattaaaggtctagtttacaagattacacttt 38344580  T
Q  207 atggacttaaatgttccttgtgcctacgtctcaccagctggagcgaccttcccatttattactccctccgtcc 279  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38344581 aaccacttaaatgttccttgtgcctacgtctcaccagctggagcgaccttcccatttattactccctccgtcc 38344653  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 11129748 - 11129687
Alignment:
Q  15 attaagaaatgtagttgattgtgtatagaaaagagtaattgtgagttgatttacaaaaatat 76  Q
    ||||| |||| ||||||||  ||||||||| ||||||||||||||||| |||||||||||||    
T  11129748 attaaaaaatatagttgatgctgtatagaagagagtaattgtgagttgttttacaaaaatat 11129687  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 11842202 - 11842161
Alignment:
Q  36 tgtatagaaaagagtaattgtgagttgatttacaaaaatatc 77  Q
    ||||||||||||||||||||||||||| |||| |||| ||||    
T  11842202 tgtatagaaaagagtaattgtgagttgttttataaaattatc 11842161  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 36343083 - 36343043
Alignment:
Q  37 gtatagaaaagagtaattgtgagttgatttacaaaaatatc 77  Q
    |||||||||| | |||||||| |||||||||||||||||||    
T  36343083 gtatagaaaataataattgtgtgttgatttacaaaaatatc 36343043  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 40439712 - 40439772
Alignment:
Q  17 taagaaatgtagttgattgtgtatagaaaagagtaattgtgagttgatttacaaaaatatc 77  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||| ||||||||||||||    
T  40439712 taagaaatgtagttaatgttgtatagaaaagagtaattgtgagttgttttacaaaaatatc 40439772  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 34944237 - 34944165
Alignment:
Q  15 attaagaaatgtagttgattgtgtatagaaaagagtaattgtgagttgatttacaaaaatatctctcattaat 87  Q
    |||||||||||||||| || |||||||||||||| ||||| ||||||  ||||| ||||||||  ||||||||    
T  34944237 attaagaaatgtagttaatggtgtatagaaaagaataattatgagttattttactaaaatatccttcattaat 34944165  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 373703 - 373777
Alignment:
Q  15 attaagaaatgtagttgattgtgtatagaaa--agagtaattgtgagttgatttacaaaaatatctctcattaat 87  Q
    ||||| |||||||||| ||||||||||||||  |||||||| |||||||  ||||||||||||||| | ||||||    
T  373703 attaataaatgtagttaattgtgtatagaaaagagagtaatcgtgagttattttacaaaaatatcttttattaat 373777  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 37288351 - 37288391
Alignment:
Q  36 tgtatagaaaagagtaattgtgagttgatttacaaaaatat 76  Q
    |||||| |||||||||||||||| ||| |||||||||||||    
T  37288351 tgtataaaaaagagtaattgtgacttgttttacaaaaatat 37288391  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 46879359 - 46879421
Alignment:
Q  15 attaagaaatgtagttgattgtgtatagaaaagagtaattgtgagttgatttacaaaaatatc 77  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||||| |||| |||||||||    
T  46879359 attaagaaatgtagttaatgttgtatagaaaagagtaattgtgagttgctttataaaaatatc 46879421  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 118875 - 118813
Alignment:
Q  15 attaagaaatgtagttgattgtgtatagaaaagagtaattgtgagttgatttacaaaaatatc 77  Q
    ||||||||||| | ||  || ||||||||||||||||||| ||||||  ||||||||||||||    
T  118875 attaagaaatggaattatttttgtatagaaaagagtaattatgagttattttacaaaaatatc 118813  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 42170770 - 42170729
Alignment:
Q  36 tgtatagaaaagagtaattgtgagttgatttacaaaaatatc 77  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  42170770 tgtatagaaaagagtaattgtgtgttgttttacaaaaatatc 42170729  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 42380562 - 42380602
Alignment:
Q  36 tgtatagaaaagagtaattgtgagttgatttacaaaaatat 76  Q
    ||||| ||||||||||||| ||||||| |||||||||||||    
T  42380562 tgtattgaaaagagtaattatgagttgttttacaaaaatat 42380602  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 9001813 - 9001741
Alignment:
Q  15 attaagaaatgtagttgattgtgtatagaaaagagtaattgtgagttgatttacaaaaatatctctcattaat 87  Q
    ||||| |||| ||||| ||  ||||| ||||| ||||||||||||||| ||||||||||||||  ||||||||    
T  9001813 attaaaaaatatagttaatgttgtattgaaaaaagtaattgtgagttgttttacaaaaatatcattcattaat 9001741  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 858381 - 858340
Alignment:
Q  36 tgtatagaaaagagtaattgtgagttgatttacaaaaatatc 77  Q
    ||||||||||||||| ||||||||||  ||||||||||||||    
T  858381 tgtatagaaaagagtgattgtgagttattttacaaaaatatc 858340  T

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