View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_138 (Length: 274)
Name: NF19530_low_138
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_138 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 9003010 - 9002759
Alignment:
| Q |
1 |
tgttagattaatttttctccttcgcttgggtttgaaccggtacctccaactcctcaacccttagctcaaacctgttcagctatccaactaatctatttat |
100 |
Q |
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| T |
9003010 |
tgttagattagtttttctccttcgcttgggtttgaaccggtacctccaactcctcaacccttagctcaaacctgttcagctatccaactaatctatttat |
9002911 |
T |
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| Q |
101 |
ggtgctgtttatatttgttataattttagttgctttttgttatctaccacatttaattatatcttagctctcactgttaatgnnnnnnnctcatgtggcc |
200 |
Q |
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| T |
9002910 |
ggtgttgtttatatttgttataattttagttgctttttgttatctaccacatttaattatatcttagctctcactgttaatgaaaaaaactcatgtggcc |
9002811 |
T |
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| Q |
201 |
ccaatctttcattactaatttcatcgtagaaacttcctttttaccttctgtg |
252 |
Q |
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| T |
9002810 |
ccaatctttcattactaatttcatcgtagaaacttcctttttaccttctgtg |
9002759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 10635330 - 10635408
Alignment:
| Q |
12 |
tttttctccttcgcttgggtttgaa-ccggtacctccaactcctcaacccttagctcaaacctgttcagctatccaact |
89 |
Q |
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| T |
10635330 |
tttttctccttcgcccgggtttgaagccaggacctccaactccttatcccttagctcaaaccagttgagctacccaact |
10635408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6296940 - 6296868
Alignment:
| Q |
1 |
tgttagattaatttttctccttcgcttgggtttgaaccg-gtacctccaactcctcaacccttagctcaaacc |
72 |
Q |
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| T |
6296940 |
tgttagattagtttttctcctttgtctgggtttgaacccagaacctccaactccttatcccttagctcaaacc |
6296868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 5130363 - 5130317
Alignment:
| Q |
85 |
caactaatctatttatggtgctgtttatatttgttataattttagtt |
131 |
Q |
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| T |
5130363 |
caactaatctattgatggtgttgtttatatttgttataactttagtt |
5130317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38020461 - 38020378
Alignment:
| Q |
1 |
tgttagattaattttt-ctccttcgcttgggtttgaaccg-gtacctccaactcctcaacccttagctcaaacctgttcagcta |
82 |
Q |
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| T |
38020461 |
tgttagattaatatttactccttcgtccgggtttgaaccttggacctccaactccttaacccttagctcaaaccagttgagcta |
38020378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 2097129 - 2097077
Alignment:
| Q |
42 |
acctccaactcctcaacccttagctcaaacctgttcagctatccaactaatct |
94 |
Q |
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| T |
2097129 |
acctccaactccttaacccttagctcaaactagttgagctacccaaccaatct |
2097077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 29728814 - 29728858
Alignment:
| Q |
44 |
ctccaactcctcaacccttagctcaaacctgttcagctatccaac |
88 |
Q |
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| T |
29728814 |
ctccaactccttaacccttagctcaaaccagttgagctacccaac |
29728858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 14195204 - 14195244
Alignment:
| Q |
42 |
acctccaactcctcaacccttagctcaaacctgttcagcta |
82 |
Q |
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| T |
14195204 |
acctccaactccttaacccttagctcaaaccagttgagcta |
14195244 |
T |
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