View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_14 (Length: 561)
Name: NF19530_low_14
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Complemental strand, 34556779 - 34556243
Alignment:
| Q |
18 |
aactgtaacgggacacagcttgggtggtgcacttgcaactataagctctatggatatagttgctaataaattcaacataccaagagggcaacctcaaaaa |
117 |
Q |
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| T |
34556779 |
aactgtaacgggacacagcttgggtggtgcacttgcaactataagctctatggatatagttgctaataaattcaacataccaaaagggcaacctcaaaaa |
34556680 |
T |
|
| Q |
118 |
acatgtccagtcacattatttgcatttggttcacctcgtgttggaaattctaactttgaaaagattttctccgacaacaatgatttgagagcattgttta |
217 |
Q |
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| T |
34556679 |
acatgtccagtcacattatttgcatttggttcacctcgtgttggaaattctaactttgaaaagattttctccgacaacaatgatttgagagcattgttta |
34556580 |
T |
|
| Q |
218 |
ttcgaaacaacaacgacattgttccaagtagtctacgccttgcatattcaaaggtgggagaggaattagaaatcgacactgaagaatctaagtacttgaa |
317 |
Q |
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| T |
34556579 |
ttcgaaacaacaacgacattgttccaagtagtctacgccttgcatattcaaaggtgggagaggaattagaaatcgacactgaaaaatcaaagtacttgaa |
34556480 |
T |
|
| Q |
318 |
gagtggggttagtgcacataacatggaggtttacttgcatggaattgcaggaacacaaggaaggaaaggagggttcaatttagaggtgaatcgtgacatt |
417 |
Q |
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| T |
34556479 |
gagtggtgttagtgaacataacatggaggtttacttgcatggaattgcaggaacacaaggaagcaaaggagggttcaatttggaggtgaatcgtgacatt |
34556380 |
T |
|
| Q |
418 |
gcactattaaacaaaagtaatgatggtttaaaagatgaatatcacattcctgagaattggagtttagtggagaataagggtatggttcaacaatctgatg |
517 |
Q |
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| T |
34556379 |
gcactattaaacaaaagtaatgatggtttaaaagatgagtatcatattcctgagaattggagggtagtggagaataagggtatggttcaacaatctgatg |
34556280 |
T |
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| Q |
518 |
gtacttggaagctaatggatgatcataatgatgatgt |
554 |
Q |
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| T |
34556279 |
gtacttggaagctaatggatgatcataatgatgatgt |
34556243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Complemental strand, 34548286 - 34547750
Alignment:
| Q |
18 |
aactgtaacgggacacagcttgggtggtgcacttgcaactataagctctatggatatagttgctaataaattcaacataccaagagggcaacctcaaaaa |
117 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| || ||||||||||||| |
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| T |
34548286 |
aactgtaactggacacagtttgggtggtgcacttgcaactataagttcagtggatatagttgctaataaattcaacatgccaaaagagcaacctcaaaaa |
34548187 |
T |
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| Q |
118 |
acatgtccagtcacattatttgcatttggttcacctcgtgttggaaattctaactttgaaaagattttctccgacaacaatgatttgagagcattgttta |
217 |
Q |
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| T |
34548186 |
gcatgtccagttacaacatttgcatttggtgcacctcgtgttggaaattcttactttcaaaagattttctctgaccacaaagatttgagtgcattgtttg |
34548087 |
T |
|
| Q |
218 |
ttcgaaacaacaacgacattgttccaagtagtct-acgccttgcatattcaaaggtgggagaggaattagaaatcgacactgaagaatctaagtacttga |
316 |
Q |
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| T |
34548086 |
ttcgaaatgaaaatgatattgttccaaaaagtctcacgtttttc-tattacaaagttggagaggaattagaaatcgacaccgaagaatctaagtacttga |
34547988 |
T |
|
| Q |
317 |
agagtggggttagtgcacataacatggaggtttacttgcatggaattgcaggaacacaaggaaggaaaggagggttcaatttagaggtgaatcgtgacat |
416 |
Q |
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| T |
34547987 |
agagtggggttagtgcacataacatggaggtttacttgcatggaattgcaggaacacaaggaagtaaaggagggttcaatttagaggtgaatcgtgacat |
34547888 |
T |
|
| Q |
417 |
tgcactattaaacaaaagtaatgatggtttaaaagatgaatatcacattcctgagaattggagtttagtggagaataagggtatggttcaacaatctgat |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
34547887 |
tgcactattaaacaaaagtaatgatggtttaaaagatgaatatcacattcctgagaattggagggtagttgagaataagggtatggttcaacaatctgat |
34547788 |
T |
|
| Q |
517 |
ggtacttggaagctaatggatgatcataatgatgatgt |
554 |
Q |
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| T |
34547787 |
ggtacttggaagttaatggatgatcataatgatgatgt |
34547750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 422
Target Start/End: Complemental strand, 4674568 - 4674487
Alignment:
| Q |
341 |
tggaggtttacttgcatggaattgcaggaacacaaggaaggaaaggagggttcaatttagaggtgaatcgtgacattgcact |
422 |
Q |
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|||||| ||| ||||||||| | |||||||||||||| || ||| ||| |||||| | ||||| |||||||| |||||||| |
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| T |
4674568 |
tggaggcttatttgcatggagtggcaggaacacaagggagtaaaagagtgttcaaacttgaggttaatcgtgatattgcact |
4674487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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