View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_low_140 (Length: 271)

Name: NF19530_low_140
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_low_140
NF19530_low_140
[»] chr7 (8 HSPs)
chr7 (9-255)||(8365136-8365386)
chr7 (118-255)||(8427432-8427569)
chr7 (151-255)||(8351612-8351715)
chr7 (176-255)||(8356801-8356880)
chr7 (9-62)||(8356987-8357040)
chr7 (151-255)||(8412883-8412985)
chr7 (183-246)||(8531502-8531565)
chr7 (24-62)||(8531810-8531848)
[»] scaffold0141 (1 HSPs)
scaffold0141 (118-190)||(9169-9241)
[»] chr4 (1 HSPs)
chr4 (26-62)||(7287236-7287272)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 8365386 - 8365136
Alignment:
Q  9 ttatactgctttcgttgtcctagaatctaatccaacattgtaaaaatactagaatttgaaaga--------gttatacatttttagaactaaaaatactg 100  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||    
T  8365386 ttatactgctttcgttgtcctagaagttaatccaacattgtaaaaatactagaatttgaaggaattgatcagttatacatttttagaactaaaaatactg 8365287  T
Q  101 ccttcctcgttgataattaaaggtgtcaatatccaaatgaaacaataatcaaatcatattaaacataataaagcatttagagaatgaatgcatgtagcag 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  8365286 ccttcatcgttgataattaaaggtgtcaatatccaaatgaaacaataatcaaatcatattaaacaatataaagcatttagagaatgaatgcatgtagcag 8365187  T
Q  201 taactatggtttctgatgttgttgtttattttttctcatctccttcggtatttct 255  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8365186 ----tatggtttctgatgttgttgtttattttttctcatctccttcggtatttct 8365136  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 255
Target Start/End: Original strand, 8427432 - 8427569
Alignment:
Q  118 taaaggtgtcaatatccaaatgaaacaataatcaaatcatattaaacataataaagcatttagagaatgaatgcatgtagcagtaactatggtttctgat 217  Q
    |||||| ||||||||  |||| ||||||| | |||||||| |||||||  ||||||||||||  ||||||||||||| || ||||||| |||||||||||    
T  8427432 taaaggagtcaatattgaaatcaaacaatcagcaaatcattttaaacagtataaagcatttaatgaatgaatgcatgcagtagtaactgtggtttctgat 8427531  T
Q  218 gttgttgtttattttttctcatctccttcggtatttct 255  Q
    || || ||||||||||||||||||||||| ||||||||    
T  8427532 gtagtggtttattttttctcatctccttcagtatttct 8427569  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 8351715 - 8351612
Alignment:
Q  151 aaatcatattaaacataataaagcatttagagaatgaatgcatgtagcagtaactatggtttctgatgttgttgtttattttttctcatctccttcggta 250  Q
    |||||||||||||| | ||||||  |||| ||||||||||||||||||||||||| ||| ||||||||| || |||||||||||| ||||||||||  ||    
T  8351715 aaatcatattaaactttataaagatttta-agaatgaatgcatgtagcagtaactgtgggttctgatgtagtggtttattttttcgcatctccttcaata 8351617  T
Q  251 tttct 255  Q
    |||||    
T  8351616 tttct 8351612  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 8356880 - 8356801
Alignment:
Q  176 tttagagaatgaatgcatgtagcagtaactatggtttctgatgttgttgtttattttttctcatctccttcggtatttct 255  Q
    |||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||| |||||||||  ||||||||    
T  8356880 tttagagaatgaatgcatgtagcagtaactgtagtttctgatgtcgtggtttattttttcgcatctcctttagtatttct 8356801  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 8357040 - 8356987
Alignment:
Q  9 ttatactgctttcgttgtcctagaatctaatccaacattgtaaaaatactagaa 62  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||    
T  8357040 ttatactgccttcgtcgtcctagaatctaattcaacattgtaaaaatactagaa 8356987  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 8412985 - 8412883
Alignment:
Q  151 aaatcatattaaacataataaagcatttagagaatgaatgcatgtagcagtaactatggtttctgatgttgttgtttattttttctcatctccttcggta 250  Q
    |||||||||||||| | ||||||  ||||| ||||||||||||| |||||||||| ||| ||||||  | || |||||||||||| ||||||||||  ||    
T  8412985 aaatcatattaaactttataaagattttagtgaatgaatgcatgcagcagtaactgtggcttctga--tagtggtttattttttcgcatctccttcaata 8412888  T
Q  251 tttct 255  Q
    |||||    
T  8412887 tttct 8412883  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 8531565 - 8531502
Alignment:
Q  183 aatgaatgcatgtagcagtaactatggtttctgatgttgttgtttattttttctcatctccttc 246  Q
    |||||||||||||||| |||||| |||| || ||||| || |||||||||||||||||||||||    
T  8531565 aatgaatgcatgtagccgtaactgtggtatccgatgtagtggtttattttttctcatctccttc 8531502  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 8531848 - 8531810
Alignment:
Q  24 tgtcctagaatctaatccaacattgtaaaaatactagaa 62  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  8531848 tgtcctagaatctaatccaacattggaaaaatactagaa 8531810  T

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Target: scaffold0141 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 9241 - 9169
Alignment:
Q  118 taaaggtgtcaatatccaaatgaaacaataatcaaatcatattaaacataataaagcatttagagaatgaatg 190  Q
    |||||| ||||||||  |||| ||||||  | |||||||| |||||||  |||||||||||||||||||||||    
T  9241 taaaggagtcaatattgaaatcaaacaaacagcaaatcattttaaacagtataaagcatttagagaatgaatg 9169  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 7287236 - 7287272
Alignment:
Q  26 tcctagaatctaatccaacattgtaaaaatactagaa 62  Q
    |||||||||||||||||| |||||||||||| |||||    
T  7287236 tcctagaatctaatccaagattgtaaaaatagtagaa 7287272  T

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