View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_141 (Length: 269)
Name: NF19530_low_141
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_141 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 80 - 253
Target Start/End: Original strand, 22394589 - 22394758
Alignment:
| Q |
80 |
gacaatgatcaaagaatattccatatcatgatcgaaggagttgcaacacatttcaatattcgttttggatcaaaaggaatcaagcaactcacttttattt |
179 |
Q |
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| T |
22394589 |
gacaatgatcaaagaatatttcatatcatgatccaaggagttgcaacacatttcaatattaattttggatcaaaaggaatcaagcaactcact----ttt |
22394684 |
T |
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| Q |
180 |
aattgaagaaaaacgatatacattcagttagagaatgatctcaaaattgagagattgacttcctacaataaaac |
253 |
Q |
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| T |
22394685 |
aattaaagaaaaacgatatacatttagttagagaatgatctcaaaattaagagattgacttcctacaataaaac |
22394758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 22394397 - 22394598
Alignment:
| Q |
5 |
agtgagaagaatcaactttgaagaataaatcttttcatgatttatttactaagtcacttgtggtaaaaatgtttggacaatgatcaaagaatattccata |
104 |
Q |
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| T |
22394397 |
agtgagaagaatcaactttaaagaataaatcttttgatgatttatttactg--------gtggcaaaa-tgtttggacaatgatcaaagaatatttcata |
22394487 |
T |
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| Q |
105 |
tcatgatcgaaggagttgcaacacatttcaatattcgttttggatcaaaaggaatcaagcaactcacttttatttaattgaagaaaaacgatatacattc |
204 |
Q |
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| T |
22394488 |
tcatgatccaaggagttgcaacacatttcaatattagttttggatcaaaaggaatcaagcaactcact----tttaattaaagaaaaacgatatacattc |
22394583 |
T |
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| Q |
205 |
agttagagaatgatc |
219 |
Q |
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| T |
22394584 |
agttagacaatgatc |
22394598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 176
Target Start/End: Complemental strand, 44851299 - 44851142
Alignment:
| Q |
37 |
tttcatgatttatttactaagtcacttgtggtaaaaatgtttggacaatgat------------------caaagaatattccatatcatgatcgaagga |
118 |
Q |
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| T |
44851299 |
tttcatgatttatttactaagtcacttgtggtaaaaatgtttggataatgattaagaatatttttatgatcaaagaatattccataacatgttcaaagga |
44851200 |
T |
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| Q |
119 |
gttgcaacacatttcaatattcgttttggatcaaaaggaatcaagcaactcactttta |
176 |
Q |
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| T |
44851199 |
gttgcaacacctttcaatattagttttggatcaaaaggaatcaaacaactcactttta |
44851142 |
T |
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