View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_low_146 (Length: 261)

Name: NF19530_low_146
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_low_146
NF19530_low_146
[»] chr8 (6 HSPs)
chr8 (1-261)||(15924712-15924972)
chr8 (1-261)||(4706807-4707069)
chr8 (1-261)||(18982195-18982453)
chr8 (32-261)||(26340667-26340894)
chr8 (133-261)||(26917578-26917706)
chr8 (1-70)||(26917498-26917567)
[»] chr7 (6 HSPs)
chr7 (1-261)||(28803335-28803594)
chr7 (145-261)||(36264533-36264649)
chr7 (183-261)||(44060367-44060446)
chr7 (31-122)||(36264469-36264562)
chr7 (183-261)||(36264729-36264807)
chr7 (146-194)||(29467237-29467285)
[»] chr2 (19 HSPs)
chr2 (1-261)||(808829-809088)
chr2 (1-261)||(44323853-44324112)
chr2 (1-261)||(2587930-2588188)
chr2 (32-258)||(45331778-45332004)
chr2 (174-261)||(31713718-31713805)
chr2 (174-261)||(39154990-39155077)
chr2 (1-71)||(31713836-31713905)
chr2 (183-261)||(4405679-4405758)
chr2 (1-71)||(39154890-39154959)
chr2 (183-261)||(9311376-9311455)
chr2 (183-261)||(4696400-4696479)
chr2 (183-261)||(10415622-10415701)
chr2 (183-261)||(26894768-26894847)
chr2 (183-261)||(26900207-26900286)
chr2 (183-261)||(9311509-9311588)
chr2 (190-258)||(9311649-9311717)
chr2 (183-261)||(4405841-4405920)
chr2 (183-261)||(26894606-26894685)
chr2 (183-261)||(26900045-26900124)
[»] chr1 (13 HSPs)
chr1 (1-261)||(17653554-17653813)
chr1 (1-261)||(14659839-14660098)
chr1 (1-261)||(16100519-16100778)
chr1 (1-261)||(47050675-47050934)
chr1 (1-261)||(14650048-14650307)
chr1 (91-261)||(10991421-10991592)
chr1 (92-257)||(17478966-17479133)
chr1 (145-261)||(29289332-29289446)
chr1 (1-123)||(19657576-19657699)
chr1 (1-104)||(29289240-29289342)
chr1 (208-258)||(17479245-17479295)
chr1 (34-104)||(20111412-20111482)
chr1 (157-236)||(26143498-26143578)
[»] chr5 (6 HSPs)
chr5 (1-261)||(5519632-5519891)
chr5 (1-261)||(42785264-42785525)
chr5 (33-261)||(27198499-27198728)
chr5 (1-115)||(15598616-15598730)
chr5 (185-261)||(15598364-15598442)
chr5 (144-236)||(15598549-15598639)
[»] chr3 (9 HSPs)
chr3 (1-261)||(28058611-28058870)
chr3 (1-261)||(28069036-28069295)
chr3 (1-261)||(19434781-19435040)
chr3 (1-258)||(28103593-28103849)
chr3 (1-261)||(6911492-6911751)
chr3 (9-236)||(11200494-11200724)
chr3 (104-261)||(5705802-5705959)
chr3 (92-236)||(17955019-17955163)
chr3 (183-244)||(17955271-17955332)
[»] chr6 (22 HSPs)
chr6 (1-261)||(22013745-22014004)
chr6 (1-261)||(27527015-27527275)
chr6 (1-261)||(25478419-25478678)
chr6 (1-261)||(33055414-33055673)
chr6 (1-261)||(33062797-33063056)
chr6 (1-261)||(28040475-28040734)
chr6 (174-261)||(27683871-27683958)
chr6 (174-261)||(27691190-27691277)
chr6 (115-261)||(6952054-6952191)
chr6 (145-257)||(15970678-15970790)
chr6 (9-123)||(27650911-27651025)
chr6 (183-257)||(13142487-13142561)
chr6 (1-71)||(17355375-17355444)
chr6 (183-261)||(9814589-9814668)
chr6 (7-123)||(15970593-15970708)
chr6 (159-261)||(17355258-17355358)
chr6 (1-71)||(27683989-27684058)
chr6 (1-71)||(27691308-27691377)
chr6 (144-235)||(27650850-27650942)
chr6 (157-261)||(30130001-30130105)
chr6 (184-261)||(9814751-9814829)
chr6 (1-71)||(6952183-6952253)
[»] chr4 (10 HSPs)
chr4 (1-261)||(4763655-4763914)
chr4 (9-261)||(27561325-27561576)
chr4 (9-261)||(5358762-5359022)
chr4 (115-261)||(54352120-54352266)
chr4 (95-261)||(18694420-18694587)
chr4 (95-261)||(51533435-51533602)
chr4 (32-104)||(11512997-11513069)
chr4 (183-261)||(27734061-27734139)
chr4 (149-261)||(11513063-11513175)
chr4 (183-258)||(27733899-27733975)
[»] scaffold0406 (1 HSPs)
scaffold0406 (1-261)||(3429-3687)
[»] scaffold0438 (2 HSPs)
scaffold0438 (32-261)||(10828-11055)
scaffold0438 (1-261)||(7814-8074)
[»] scaffold0713 (2 HSPs)
scaffold0713 (159-261)||(563-664)
scaffold0713 (17-71)||(681-735)
[»] scaffold0007 (3 HSPs)
scaffold0007 (183-261)||(60259-60338)
scaffold0007 (175-261)||(60422-60508)
scaffold0007 (1-74)||(60505-60577)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 15924972 - 15924712
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  15924972 ttaaagaaaatatagaaatcgcatatagtgaaaaaggaatcgaaataatcaaatccaaatagaatgtaaaaatcggacttaatgaaatggaatcaaaata 15924873  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15924872 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 15924773  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  15924772 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 15924712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4706807 - 4707069
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaa---tcggacttaatgaaatggaatcaaa 97  Q
    ||||||| |||||||||||||  ||||||||||| |||||||| ||||||||||||||||| | ||||||||   ||| ||||||||||||| |||||||    
T  4706807 ttaaagaaaatatagaaatcgattataatgaaaa-ggaatcgagataatcaaatccaaataaaatataaaaaaaatcgaacttaatgaaatgaaatcaaa 4706905  T
Q  98 ataatcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4706906 ataatcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaagtttagtgaaaataat 4707005  T
Q  198 caaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  4707006 caaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 4707069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 18982453 - 18982195
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||    
T  18982453 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaa-tagaatataaaaatcgggcttaatgaaatggaatcaaaata 18982356  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||    
T  18982355 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataataaactttaaataaagtatagaaatctaactttggtgaaaataatcaa 18982256  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  18982255 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 18982195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 26340667 - 26340894
Alignment:
Q  32 aaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaataatcacttcaaagaaaatataaaaccatattc 131  Q
    |||| ||||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  26340667 aaaatgaatcgaaataatcaaatccaaatagaatatgaaaaccggatttaatgaaatggaatcaaaataatcacttcaaagaaaacataaaatcatattc 26340766  T
Q  132 aatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgt 231  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  26340767 aatttcataatgccaaaataatcaactttaaataaagtatagaaatccaacttcagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgt 26340866  T
Q  232 tgataaccctctcctcctaatggtggcctt 261  Q
    ||||| ||  ||||||| ||||||||||||    
T  26340867 tgatagcc--ctcctccaaatggtggcctt 26340894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 133 - 261
Target Start/End: Original strand, 26917578 - 26917706
Alignment:
Q  133 atttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgtt 232  Q
    |||| ||||||| ||||||||| ||||| || |||||||| |||||||||||||| |||||||||| ||| ||| ||||||||||||| | |||||||||    
T  26917578 atttaataatactaaaataatcgactttgaagaaagtataaaaatccaactttagcgaaaataatctaatgggtgaatcgagaactagcttcatctcgtt 26917677  T
Q  233 gataaccctctcctcctaatggtggcctt 261  Q
    |||| | ||||| ||||||||||||||||    
T  26917678 gatagcactctcttcctaatggtggcctt 26917706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 26917498 - 26917567
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaa 70  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26917498 ttaaagaaaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagaatataaa 26917567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 28803594 - 28803335
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28803594 ttaaagagaatatagaaatcgcatataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaattggacttaatgaaatggaatcaaaata 28803495  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  28803494 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaac-ttaaataaagtatagaaattcaactttaatgaaaataatcaa 28803396  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28803395 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 28803335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 36264533 - 36264649
Alignment:
Q  145 caaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctc 244  Q
    ||||||||||||||| ||| |||||||| | || ||| ||| |||||||||   |||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  36264533 caaaataatcaacttcaaagaaagtataaagattcaattttcgtgaaaatatcaaaatgggtgaatcgagaactagctccatctcgttgatagccctctc 36264632  T
Q  245 ctcctaatggtggcctt 261  Q
    |||||||||||| ||||    
T  36264633 ctcctaatggtgacctt 36264649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 44060367 - 44060446
Alignment:
Q  183 tttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  44060367 tttagtgaaaataaacaaaataggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 44060446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 36264469 - 36264562
Alignment:
Q  31 aaaaaggaatcgaaataatcaaa-tccaaatagagtataaaaatcggacttaatgaaatggaatcaaaataatc-acttcaaagaaaatataaa 122  Q
    |||||||||| |||||||| ||| |||||||||| ||||||||||||| |||||||| |||||||||||||||| |||||||||||| ||||||    
T  36264469 aaaaaggaattgaaataataaaaatccaaatagaatataaaaatcggatttaatgaagtggaatcaaaataatcaacttcaaagaaagtataaa 36264562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 36264729 - 36264807
Alignment:
Q  183 tttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||| ||||||||||||| ||| ||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||    
T  36264729 tttagtcaaaataatcaaatgggtgaatcgagaactaactccatctcgttgatagccctctcctcctaatggtgacctt 36264807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 29467237 - 29467285
Alignment:
Q  146 aaaataatcaactttaaataaagtatagaaatccaactttagtgaaaat 194  Q
    |||||||||||||||||| |||||||| |||||  ||||||||||||||    
T  29467237 aaaataatcaactttaaagaaagtataaaaatctgactttagtgaaaat 29467285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 808829 - 809088
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  808829 ttaaagaaaatatagaaaccgcgtataatgaaaaag-aatcgagataatcaaatccaaatagaatataaaagtcggacttaatgaaatggaatcaaaata 808927  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  808928 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaattaatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 809027  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  809028 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 809088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 44324112 - 44323853
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||||||||||  ||||||||||| | |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  44324112 ttaaagaaaatatagaaatcgattataatgaaaa-gaaatcgagataatcaaatccaaatagaatataaaagtcggacttaatgaaatggaatcaaaata 44324014  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44324013 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaagtttagtgaaaataatcaa 44323914  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  44323913 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 44323853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 2588188 - 2587930
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||| | ||||||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  2588188 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcaagataatcaaatccaaatagaatataaaaattgggcttaatgaaatggaatcaaaata 2588090  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  2588089 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatctaactttggtgaaaataatcaa 2587990  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  2587989 atgggtgaatcgagaactagctcc-tctcgttgatagccctctcctcctaatggtggcctt 2587930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 32 - 258
Target Start/End: Complemental strand, 45332004 - 45331778
Alignment:
Q  32 aaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaataatcacttcaaagaaaatataaaaccatattc 131  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45332004 aaaaggaatcgagataatcaaatccaaatagaatataaaaatcgggcttaatgaaatggaatcaaaataatcacttcaaagaaaatataaaatcatattc 45331905  T
Q  132 aatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgt 231  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||| ||||||||||||| ||||||||||    
T  45331904 aatttcataataccaaattaatcaactttaaataaagtataaaaatctaactttggtgaaaataatcaaatgggtgaatcgagaactagctccatctcgt 45331805  T
Q  232 tgataaccctctcctcctaatggtggc 258  Q
    ||||| |||||||||||||||||||||    
T  45331804 tgatagccctctcctcctaatggtggc 45331778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 31713805 - 31713718
Alignment:
Q  174 aaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||||||||||||| |||||||| |||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  31713805 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 31713718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 39154990 - 39155077
Alignment:
Q  174 aaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||||||||||||| |||||||| |||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  39154990 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 39155077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31713905 - 31713836
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaa 71  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31713905 ttaaagaaaatatagaa-tcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagaatataaaa 31713836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 4405758 - 4405679
Alignment:
Q  183 tttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||| |||||||||||||| | ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  4405758 tttaatgaaaataatcaaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 4405679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 39154890 - 39154959
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaa 71  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  39154890 ttaaagaaaatatagaa-tcgcgtataatgaaaaaggaatcgaaataatcaattccaaatagaatataaaa 39154959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 9311376 - 9311455
Alignment:
Q  183 tttagtgaaaataatcaaatagg-tcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||||||||||| ||||  || | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  9311376 tttagtgaaaataaacaaaatggatgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 9311455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 4696479 - 4696400
Alignment:
Q  183 tttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||| |||||||||||| | ||| ||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||    
T  4696479 tttagtaaaaataatcaaaatgggtgaatcgagaactagctccatctcgttgatagccctatcctcctaatggtgtcctt 4696400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 10415701 - 10415622
Alignment:
Q  183 tttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||| || ||||||||| | ||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||    
T  10415701 tttagtaaatataatcaaaatgggtgaatcgagaactagctccatctcgttgatagccctcttctcctaatggtggcctt 10415622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 26894768 - 26894847
Alignment:
Q  183 tttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||| |||||||||||||| | ||| |||||||||| || ||||||||||| ||| ||||||||||||||||||||||||    
T  26894768 tttaatgaaaataatcaaaatgggtgaatcgagaacaagctccatctcgttaatagccctctcctcctaatggtggcctt 26894847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 26900207 - 26900286
Alignment:
Q  183 tttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||| |||||||||||||| | ||| |||||||||| || ||||||||||| ||| ||||||||||||||||||||||||    
T  26900207 tttaatgaaaataatcaaaatgggtgaatcgagaacaagctccatctcgttaatagccctctcctcctaatggtggcctt 26900286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 9311509 - 9311588
Alignment:
Q  183 tttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||| |||||||||||| | ||| ||| ||||||||| ||||||| ||||||| |||| |||||||||||||||||||    
T  9311509 tttagtaaaaataatcaaaatgggtgaattgagaactagctccatcttgttgatagccctttcctcctaatggtggcctt 9311588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 9311649 - 9311717
Alignment:
Q  190 aaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggc 258  Q
    |||||||||||| | ||| ||||||||||||| | ||||||||||||| ||||||||| |||||||||||    
T  9311649 aaaataatcaaaatgggtgaatcgagaactagcttcatctcgttgatagccctctcct-ctaatggtggc 9311717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 4405920 - 4405841
Alignment:
Q  183 tttagtgaaaataatc-aaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||||||| ||||| |||| ||| ||||||||||||| ||||||||||||||| | || |||| ||||  ||||||||    
T  4405920 tttagtgaaagtaatcgaaatgggtgaatcgagaactagctccatctcgttgatagctctttcctactaagagtggcctt 4405841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 26894606 - 26894685
Alignment:
Q  183 tttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||||||| |||||||| | ||| ||||||||||||| ||||||||||||||| | || |||| ||||  ||||||||    
T  26894606 tttagtgaaactaatcaaaatgggtgaatcgagaactagctccatctcgttgatagctctttcctgctaagagtggcctt 26894685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 26900045 - 26900124
Alignment:
Q  183 tttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||||||| |||||||| | ||| ||||||||||||| ||||||||||||||| | || |||| ||||  ||||||||    
T  26900045 tttagtgaaactaatcaaaatgggtgaatcgagaactagctccatctcgttgatagctctttcctgctaagagtggcctt 26900124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 17653554 - 17653813
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||||||||||  ||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  17653554 ttaaagaaaatatagaaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaagtcggacttaatgaaatggaatcaaaata 17653652  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17653653 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 17653752  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  17653753 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 17653813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 14660098 - 14659839
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  14660098 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcgggcttaatgaaatggaatcaaaata 14660000  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  14659999 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatctaactttggtgaaaataatcaa 14659900  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  14659899 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 14659839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 16100778 - 16100519
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  16100778 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcgggcttaatgaaatggaatcaaaata 16100680  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  16100679 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatctaactttagtgaaaatactcaa 16100580  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  16100579 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 16100519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 47050675 - 47050934
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  47050675 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcgggcttaatgaaatggaatcaaaata 47050773  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  47050774 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatctaactttggtgaaaataatcaa 47050873  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  47050874 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 47050934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 14650307 - 14650048
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| ||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  14650307 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagatagtcaaatccaaatagaatataaaaatcgggcttaatgaaatggaatcaaaata 14650209  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  14650208 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatctaactttggtgaaaataatcaa 14650109  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  14650108 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 14650048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 91 - 261
Target Start/End: Original strand, 10991421 - 10991592
Alignment:
Q  91 aatcaaaataatcac-ttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtg 189  Q
    ||||||||||||||  |||||  | ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  10991421 aatcaaaataatcaaattcaactataatataaaatcatattcaatttcataatacgagaataatcaactttaaataaagtatagaaatccaactttagtg 10991520  T
Q  190 aaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||  | ||||||||||||| |||||||    
T  10991521 aaaataatcaaataggtgaatcgagaactacctccatctcgttgatagtcttctcctcctaatgatggcctt 10991592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 92 - 257
Target Start/End: Original strand, 17478966 - 17479133
Alignment:
Q  92 atcaaaataatca-cttcaaagaaaatataaaaccatatt-caatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtg 189  Q
    ||||||||||||| ||||||| | ||||||||| || ||| || ||| || ||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  17478966 atcaaaataatcaacttcaaatagaatataaaatcacatttcagtttgattataccaaaataatcaactttaaagaaaatataaaaatccaactttagtg 17479065  T
Q  190 aaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtgg 257  Q
    | ||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  17479066 acaataatcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtgg 17479133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 29289332 - 29289446
Alignment:
Q  145 caaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctc 244  Q
    |||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||    
T  29289332 caaaataatcaactttaaataaagtataaaaatctaactttggtgaaaataatcaaat-ggtgaatcgagaactagctccatctcgttgatagccctctc 29289430  T
Q  245 ctcctaatggtggcctt 261  Q
    || ||||||||||||||    
T  29289431 ct-ctaatggtggcctt 29289446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 19657576 - 19657699
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatc-aaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaat 99  Q
    ||||||| |||||||||||| |  |||||||||| ||||| ||||||||  ||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  19657576 ttaaagaaaatatagaaatcacacataatgaaaa-ggaattgaaataatagaaatccaaatagaatataaaaatcggatttaatgaaatgaaatcaaaat 19657674  T
Q  100 aatc-acttcaaagaaaatataaaa 123  Q
    |||| |||||||||||| |||||||    
T  19657675 aatcaacttcaaagaaagtataaaa 19657699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 29289240 - 29289342
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| |||| |  ||||||||||| |||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  29289240 ttaaagaaaatatataaattgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataacaatcgggcttaatgaaatggaatcaaaata 29289338  T
Q  101 atca 104  Q
    ||||    
T  29289339 atca 29289342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 17479245 - 17479295
Alignment:
Q  208 aatcgagaactagatccatctcgttgataaccctctcctcctaatggtggc 258  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  17479245 aatcgagaactagctccatctcgttgatagccctctcctcctaatggtggc 17479295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 20111412 - 20111482
Alignment:
Q  34 aaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaataatca 104  Q
    |||||||  ||||||| |||| |||||||| |||||||||||||  |||||||  ||||||||||||||||    
T  20111412 aaggaattaaaataataaaattcaaatagaatataaaaatcggatgtaatgaagaggaatcaaaataatca 20111482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 26143498 - 26143578
Alignment:
Q  157 ctttaaataaagtatagaaatccaactttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgata 236  Q
    ||||||| |||||||||||| |  | |||||| |||||||||||| | |||  |||||||||||||| |||||||||||||    
T  26143498 ctttaaagaaagtatagaaaactcaatttagttaaaataatcaaaatgggtggatcgagaactagattcatctcgttgata 26143578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 5519632 - 5519891
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||||||||||  ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5519632 ttaaagaaaatatagaaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcggacttaatgaaatggaatcaaaata 5519730  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5519731 atcaattcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaattatagaaatccaactttagtgaaaataatcaa 5519830  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  5519831 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 5519891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 42785525 - 42785264
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaa--tcggacttaatgaaatggaatcaaaa 98  Q
    ||||||| |||||||||||||  ||||||||||| | |||||| ||||||||||||||||| | ||||||||  ||| ||||||||||||| ||||||||    
T  42785525 ttaaagaaaatatagaaatcgattataatgaaaatg-aatcgagataatcaaatccaaataaaatataaaaaaatcgaacttaatgaaatgaaatcaaaa 42785427  T
Q  99 taatcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42785426 taatcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatc 42785327  T
Q  199 aaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||| ||| ||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  42785326 aaatgggtgaatcgagaactagctccatctcgttgatagtcctctcctcctaatggtggcctt 42785264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 33 - 261
Target Start/End: Original strand, 27198499 - 27198728
Alignment:
Q  33 aaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaataatca-cttcaaagaaaatataaaaccatattc 131  Q
    ||||||||| |||||||||||| ||| |||| ||||| |||||||  |||||||| |||||||||||||||| ||||||| ||||||||||| |  ||||    
T  27198499 aaaggaatcaaaataatcaaattcaa-tagaatataagaatcggatgtaatgaaa-ggaatcaaaataatcaacttcaaataaaatataaaatcggattc 27198596  T
Q  132 aatttcataataccaaaataatcaactttaaat-aaagtatagaaatccaactttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctc 229  Q
    | ||| |||||||||| |||||||||||||||  |||||| | ||||||||||||| |||||||||||||| | ||| ||||||||||||| | ||||||    
T  27198597 agtttaataataccaagataatcaactttaaaagaaagtaaataaatccaactttaatgaaaataatcaaaatgggtgaatcgagaactagtttcatctc 27198696  T
Q  230 gttgataaccctctcctcctaatggtggcctt 261  Q
    ||||||| ||||||||||||||||||| ||||    
T  27198697 gttgatagccctctcctcctaatggtgccctt 27198728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 15598730 - 15598616
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaat-caaaat 99  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||||    
T  15598730 ttaaagaaaatatagaaatcgcgtataatgaaa--ggaatcgaaataatcaaatccaaatagaatataaaaatcggatttaatgaattggaatccaaaat 15598633  T
Q  100 aatc-acttcaaagaaa 115  Q
    |||| ||||||||||||    
T  15598632 aatcaacttcaaagaaa 15598616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 15598442 - 15598364
Alignment:
Q  185 tagtgaaaataatcaaata--ggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||||||||||||| ||| |  ||| ||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  15598442 tagtgaaaataataaaaaatgggtgaattgagaactagcttcatctcgttgatagccctctcctcctaatggtggcctt 15598364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 15598639 - 15598549
Alignment:
Q  144 ccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgata 236  Q
    |||||||||||||||| ||| |||| ||| || |||||||| ||| | ||||||||| | | | ||||||||||||| |||||||||||||||    
T  15598639 ccaaaataatcaacttcaaagaaagcata-aagtccaacttgagtaagaataatcaa-tggatgaatcgagaactagctccatctcgttgata 15598549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 28058611 - 28058870
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||||||||||  ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28058611 ttaaagaaaatatagaaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcggacttaatgaaatggaatcaaaata 28058709  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28058710 atcacttcaaagaaaatataaaactatattcgatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttaatgaaaataatcaa 28058809  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28058810 atgggtgaatcgagcactagctccatctcgttgatagccctctcctcctaatggtggcctt 28058870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 28069036 - 28069295
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||||||||||  ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28069036 ttaaagaaaatatagaaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcggacttaatgaaatggaatcaaaata 28069134  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28069135 atcacttcaaagaaaatataaaactatattcgatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttaatgaaaataatcaa 28069234  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28069235 atgggtgaatcgagcactagctccatctcgttgatagccctctcctcctaatggtggcctt 28069295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 19435040 - 19434781
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  19435040 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcgggcttaatgaaatggaatcaaaata 19434942  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  19434941 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatctaactttggtgaaaataatcaa 19434842  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  19434841 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 19434781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 28103849 - 28103593
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| |||| |  ||||||||||| |||||||| ||||||||||||||||||| |||||||||| | |||||||||||| ||||||||||    
T  28103849 ttaaagaaaatatataaattgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcaggcttaatgaaatgaaatcaaaata 28103751  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||    
T  28103750 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtataaaaatctaactttggtgaaaataatcaa 28103651  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggc 258  Q
    || ||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  28103650 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggc 28103593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 6911492 - 6911751
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||||| |||||| |||||||| |||||||||| |||||||||||| ||||| ||||||||| |||||||    
T  6911492 ttaaagaaaatatataaatcgattataatgaaaaag-aatcgagataatcaagtccaaatagaatataaaaatcgggcttaacgaaatggaaccaaaata 6911590  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||    
T  6911591 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtttagaaatctaactttggtgaaaataatcaa 6911690  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |  ||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  6911691 aggggtgaatcgagaactagctccatctcgttgatagccatctcctcctaatggtggcctt 6911751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 11200724 - 11200494
Alignment:
Q  9 aatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaataatca-ctt 107  Q
    |||||| |||||| ||||||||||||||||||| || | |||||||     |||| |||||||||||||  | |||||| |||||||||||||||| |||    
T  11200724 aatatataaatcgagtataatgaaaaaggaatcaaactcatcaaattatcttagaatataaaaatcggatatgatgaaaaggaatcaaaataatcaactt 11200625  T
Q  108 caaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaa--tagg 205  Q
    |||| | ||||||||| |||||||||||| || |||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||  | ||    
T  11200624 caaatagaatataaaatcatattcaatttaatcataccaaaataatcaactttaaataaagtacataaattcaactttagtgaaaataatcaaaatttgg 11200525  T
Q  206 tcaatcgagaactagatccatctcgttgata 236  Q
    | ||||||||||||| |||||||| ||||||    
T  11200524 tgaatcgagaactagctccatctcattgata 11200494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 104 - 261
Target Start/End: Original strand, 5705802 - 5705959
Alignment:
Q  104 acttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaata 203  Q
    |||||||| | ||||||||| || ||||| ||| |||| ||||||||||||||||||| | ||||||| |||||||||||||| ||||||||| |||||     
T  5705802 acttcaaatagaatataaaatcacattcagtttaataacaccaaaataatcaactttatagaaagtattgaaatccaactttaatgaaaataaccaaatg 5705901  T
Q  204 ggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  5705902 ggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 5705959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 17955019 - 17955163
Alignment:
Q  92 atcaaaataatca-cttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtga 190  Q
    ||||||||||||| ||| ||| | ||||||||| || ||||||| | || ||||||||||||| ||||||||| |||||||| || |||||||||| |||    
T  17955019 atcaaaataatcaactttaaatagaatataaaatcacattcaatctgattataccaaaataataaactttaaagaaagtataaaactccaactttaatga 17955118  T
Q  191 aaataatcaaataggtcaatcgagaactagatccatctcgttgata 236  Q
    |||||||| ||| ||| ||||||||||||| | ||| |||||||||    
T  17955119 aaataatc-aatgggtgaatcgagaactagcttcatttcgttgata 17955163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 17955271 - 17955332
Alignment:
Q  183 tttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctc 244  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||||||||||| |||||||    
T  17955271 tttagtgaaaataatcaaatgtgtgaatcgagaactagctccatctcgttgatagccctctc 17955332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 22014004 - 22013745
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||||||||||  ||||||||||| | |||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  22014004 ttaaagaaaatatagaaatcgattataatgaaaa-gaaatcgagataatcaaatccaaatagaatataaaagtcggacttaatgaaatggaatcaaaata 22013906  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  22013905 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatcctagtttagtgaaaataatcaa 22013806  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  22013805 atgggtgaatcgagaactaactccatctcgttgatagccctctcctcctaatggtggcctt 22013745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 27527275 - 27527015
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  27527275 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcgggcttaatgaaatggaatcaaaata 27527177  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  27527176 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatcaaactttggtgaaaataatcaa 27527077  T
Q  201 at-aggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||  ||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  27527076 atggggtgaatcgagaactagcttcatctcgttgatagccctctcctcctaatggtggcctt 27527015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 25478419 - 25478678
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  25478419 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcgggcttaatgaaatggaatcaaaata 25478517  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  25478518 atcacttcaaagaaaatataaaatcatattcaatttcataatacaaaaatgatcaactttaaataaagtatagaaatctaactttggtgaaaataatcaa 25478617  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  25478618 atgggtgaatcgagaactagctccatctcgttgatagccctctccacctaatggtggcctt 25478678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 33055673 - 33055414
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  33055673 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcgggcttaatgaaatggaatcaaaata 33055575  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  33055574 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatttaactttggtgaaaataatcaa 33055475  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||    
T  33055474 atgggtgaatcgagaactagctccatcttgttgatagccctctcctcccaatggtggcctt 33055414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 33063056 - 33062797
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  33063056 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcgggcttaatgaaatggaatcaaaata 33062958  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  33062957 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatttaactttggtgaaaataatcaa 33062858  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||    
T  33062857 atgggtgaatcgagaactagcttcatctcgttgatagccctctcctcccaatggtggcctt 33062797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 28040734 - 28040475
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| ||||||||||||||||| | ||||||||  || |||||||||||||||||||||||    
T  28040734 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatataatataaaaactgggcttaatgaaatggaatcaaaata 28040636  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  28040635 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaacttgaaataaagtatagaaatctaactttggtgaaaataatcaa 28040536  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||  ||||||||||||||| |||| |||||||||||||||||||    
T  28040535 atgggtgaatcgagaactaactccatctcgttgatagccctttcctcctaatggtggcctt 28040475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 27683958 - 27683871
Alignment:
Q  174 aaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||||||||||||| |||||||| |||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  27683958 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 27683871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 27691277 - 27691190
Alignment:
Q  174 aaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||||||||||||| |||||||| |||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  27691277 aaatccaactttattgaaaatagtcaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 27691190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 261
Target Start/End: Complemental strand, 6952191 - 6952054
Alignment:
Q  115 aatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgag 214  Q
    ||||||||| || |||| |||| |||||||||||||||| ||||||||| |||||||| ||||||         |||||||||||||| ||| |||||||    
T  6952191 aatataaaatcaaattccatttaataataccaaaataataaactttaaagaaagtataaaaatcc---------gaaaataatcaaatgggtgaatcgag 6952101  T
Q  215 aactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||| ||||||||||||||| |||||||||| ||||| |||||||    
T  6952100 aactagctccatctcgttgatagccctctcctcataatgatggcctt 6952054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 15970678 - 15970790
Alignment:
Q  145 caaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctc 244  Q
    ||||||||||||||| ||| ||| |||| |||||||| ||||||||| |||   |||| ||| ||||||||||||||| | ||||||||||| |||||||    
T  15970678 caaaataatcaacttgaaagaaattataaaaatccaattttagtgaatatatcaaaatgggtgaatcgagaactagattcttctcgttgatagccctctc 15970777  T
Q  245 ctcctaatggtgg 257  Q
    |||||||||||||    
T  15970778 ctcctaatggtgg 15970790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 27651025 - 27650911
Alignment:
Q  9 aatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaataatc-actt 107  Q
    ||||||||||||  |||||||||||| |||||| ||||||||||||||||||||| ||||| ||||||| ||||||||||| |  |||||||||| ||||    
T  27651025 aatatagaaatcatgtataatgaaaa-ggaatccaaataatcaaatccaaatagactataacaatcggatttaatgaaatgaatccaaaataatcaactt 27650927  T
Q  108 caaagaaaatataaaa 123  Q
    || ||||| |||||||    
T  27650926 cagagaaagtataaaa 27650911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 13142487 - 13142561
Alignment:
Q  183 tttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtgg 257  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||||||||| ||||||||||||||||||||    
T  13142487 tttagtgaaaataatcaaatgggtgaatcgagaactagctctatctcgttgatagccctctcctcctaatggtgg 13142561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17355444 - 17355375
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaa 71  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17355444 ttaaagaaaatatagaa-tcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagaatataaaa 17355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 9814668 - 9814589
Alignment:
Q  183 tttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||| |||||||||||| ||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  9814668 tttagtaaaaataatcaaaataggtgaattgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 9814589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 15970593 - 15970708
Alignment:
Q  7 agaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaataatc-ac 105  Q
    ||||||||||||||    |||||||||| |  |||||||||||||||||||||| || ||||||||| ||| | ||||||||||||||||||||||| ||    
T  15970593 agaatatagaaatcatccataatgaaaagg--atcgaaataatcaaatccaaatcgaatataaaaattggattcaatgaaatggaatcaaaataatcaac 15970690  T
Q  106 ttcaaagaaaatataaaa 123  Q
    || ||||||| |||||||    
T  15970691 ttgaaagaaattataaaa 15970708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 17355358 - 17355258
Alignment:
Q  159 ttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggc 258  Q
    ||||| |||||||| |||||||| |||  ||||||||||||| | ||| ||||||||||||| ||||||||||||||| ||| |||||||||||||||||    
T  17355358 ttaaagaaagtata-aaatccaattttt-tgaaaataatcaagtgggtgaatcgagaactagctccatctcgttgatagcccgctcctcctaatggtggc 17355261  T
Q  259 ctt 261  Q
    |||    
T  17355260 ctt 17355258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27684058 - 27683989
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaa 71  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  27684058 ttaaagaaaatatagaa-tcgcgtataatgaaaaaggaatcgaaataatcaattccaaatagaatataaaa 27683989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27691377 - 27691308
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaa 71  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  27691377 ttaaagaaaatatagaa-tcgcgtataatgaaaaaggaatcgaaataatcaattccaaatagaatataaaa 27691308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 27650942 - 27650850
Alignment:
Q  144 ccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatc-aaataggtcaatcgagaactagatccatctcgttgat 235  Q
    |||||||||||||||| | | |||||||| ||||||||||||||||||||||||| |||| | | ||||||||||||| ||||| ||||||||    
T  27650942 ccaaaataatcaacttcagagaaagtataaaaatccaactttagtgaaaataatcaaaatggatgaatcgagaactagctccatatcgttgat 27650850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 30130105 - 30130001
Alignment:
Q  157 ctttaaataaagtatagaaatccaactttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggt 255  Q
    ||||||| ||| ||||||||||    |||||| |||||||||||| | ||| ||||||||||||| ||||||||| ||||| || |||||||||||||||    
T  30130105 ctttaaagaaaatatagaaatctccatttagtaaaaataatcaaaatgggtgaatcgagaactagctccatctcgctgatagcc-tctcctcctaatggt 30130007  T
Q  256 ggcctt 261  Q
    ||||||    
T  30130006 ggcctt 30130001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 9814829 - 9814751
Alignment:
Q  184 ttagtgaaaataatcaaa-taggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| | || |||| ||||  ||||||||    
T  9814829 ttagtgaaaataatcaaaataggtgaatcgagaactagctccatctcgttgatagctctttcctactaagagtggcctt 9814751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 6952253 - 6952183
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaa 71  Q
    ||||||| |||||| |||| ||||| || ||||||||||| |||||||||||||  ||||||| |||||||    
T  6952253 ttaaagaaaatatataaattgcgtacaaagaaaaaggaattgaaataatcaaatttaaatagaatataaaa 6952183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4763655 - 4763914
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||    
T  4763655 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaaatcgggcttaacgaaatggaatcaaaata 4763753  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  4763754 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatctaactttggtgaaaataatcaa 4763853  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    || ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  4763854 atgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 4763914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 27561325 - 27561576
Alignment:
Q  9 aatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaataatcacttc 108  Q
    |||||| ||||||  ||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  27561325 aatatataaatcgattataatgaaaa-ggaatcgagataatcaaatccaaatagaatataaaagtcggacttaatgaaatggaatcaaaataatcacttc 27561423  T
Q  109 aaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtca 208  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |    
T  27561424 aaagcaaatataaaaccattttcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaacttcagtgaaaataatcaaatgggtga 27561523  T
Q  209 atcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  27561524 atcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 27561576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 5358762 - 5359022
Alignment:
Q  9 aatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaa---------tcggacttaatgaaatggaatcaaaat 99  Q
    ||||||||||| | ||||||||| || |||||  ||||||||||||||||||||| ||||||||         ||| | |||||||||||||||||||||    
T  5358762 aatatagaaatagagtataatgagaa-ggaatgaaaataatcaaatccaaatagaatataaaaaaaaaaaaaatcgaatttaatgaaatggaatcaaaat 5358860  T
Q  100 aatcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatca 199  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||  |    
T  5358861 aatcacttcaaagaaaatataaaattgtattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaacttttgtaaaaataaata 5358960  T
Q  200 aataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||| ||| ||||||||||||  ||||||| |||||||  |||||||||||||||||||||||    
T  5358961 aatgggtgaatcgagaactatctccatcttgttgatagtcctctcctcctaatggtggcctt 5359022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 115 - 261
Target Start/End: Original strand, 54352120 - 54352266
Alignment:
Q  115 aatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgag 214  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||    
T  54352120 aatataaaatcaaattcaatttaataataccaaaataatcaactttaaataaagtataaaaatccaactttagtgaaaataatcaaatgggtgaatcgag 54352219  T
Q  215 aactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  54352220 aactagctccatctcgttgatagccctctcctcctaatggtggcctt 54352266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 95 - 261
Target Start/End: Original strand, 18694420 - 18694587
Alignment:
Q  95 aaaataatca-cttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaa 193  Q
    |||||||||| ||||||| | ||||||||| |   |||| ||| |||||||||||||||||||||||| | ||||||| |||||||||||||| ||||||    
T  18694420 aaaataatcaacttcaaatagaatataaaatcgcgttcagtttaataataccaaaataatcaactttatagaaagtattgaaatccaactttaatgaaaa 18694519  T
Q  194 taatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||| ||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  18694520 taaccaaatgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 18694587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 261
Target Start/End: Complemental strand, 51533602 - 51533435
Alignment:
Q  95 aaaataatca-cttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaa 193  Q
    |||||||||| ||||||| | ||||||||| || ||||| ||| ||||||||||||||||||| ||||   ||||||| ||||||||||||||   ||||    
T  51533602 aaaataatcaacttcaaatagaatataaaatcacattcagtttaataataccaaaataatcaaatttattgaaagtattgaaatccaactttaactaaaa 51533503  T
Q  194 taatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||| |||||  || ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  51533502 taaccaaatgagtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 51533435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 11512997 - 11513069
Alignment:
Q  32 aaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaataatca 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||  |||||||    
T  11512997 aaaaggaatcgaaataatcaaatccaaatagaatataaaaatcggatttaatgaaatggaatcattataatca 11513069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 27734061 - 27734139
Alignment:
Q  183 tttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |||||| ||||||||||||| ||| ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  27734061 tttagtaaaaataatcaaatgggtgaatcgagaactatctccatctcgttgatagccctctcctcctaatggtggcctt 27734139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 11513063 - 11513175
Alignment:
Q  149 ataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcc 248  Q
    |||||||||||  || |||||||| |||||||| ||||||||| |||   |||| | | ||||||||||||  ||||||||||||||| |||||||||||    
T  11513063 ataatcaacttcgaaaaaagtataaaaatccaattttagtgaatatatcaaaatggttgaatcgagaactacctccatctcgttgatagccctctcctcc 11513162  T
Q  249 taatggtggcctt 261  Q
    |||||||||||||    
T  11513163 taatggtggcctt 11513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 27733899 - 27733975
Alignment:
Q  183 tttagtgaaaataatcaaatagg-tcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggc 258  Q
    |||||| ||||||||||||  || | ||| ||||||||| ||||||||||||||| || ||||||||||||||||||    
T  27733899 tttagtaaaaataatcaaaatggatgaattgagaactagctccatctcgttgatagccgtctcctcctaatggtggc 27733975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 3687 - 3429
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| |||||| ||||||  ||||||||||| |||||||| |||||||||| || ||||| |||||||||||| |||||||||||||||||||||||    
T  3687 ttaaagaaaatatataaatcgattataatgaaaa-ggaatcgagataatcaaattcacatagaatataaaaatcgggcttaatgaaatggaatcaaaata 3589  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaa 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  3588 atcacttcaaagaaaatataaaatcatattcaatttcataataccaaaataatcaactttaaataaagtatagaaatctaactttggtgaaaataatcaa 3489  T
Q  201 ataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    |  ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  3488 a-cggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 3429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 10828 - 11055
Alignment:
Q  32 aaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaataatcacttcaaagaaaatataaaaccatattc 131  Q
    |||| ||||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  10828 aaaatgaatcgaaataatcaaatccaaatagaatatgaaaaccggatttaatgaaatggaatcaaaataatcacttcaaagaaaacataaaatcatattc 10927  T
Q  132 aatttcataataccaaaataatcaactttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgt 231  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  10928 aatttcataatgccaaaataatcaactttaaataaagtatagaaatccaacttcagtgaaaataatcaaatgggtgaatcgagaactagctccatctcgt 11027  T
Q  232 tgataaccctctcctcctaatggtggcctt 261  Q
    ||||| ||  ||||||| ||||||||||||    
T  11028 tgatagcc--ctcctccaaatggtggcctt 11055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 7814 - 8074
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatcggacttaatgaaatggaatcaaaata 100  Q
    ||||||| ||||||||||  | |||| ||||||| | |||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||| ||    
T  7814 ttaaagaaaatatagaaactgggtatgatgaaaatg-aatcgaaataatcaaatccaaatagaatatgaaaaccggatttaatgaaatggaatcaaagta 7912  T
Q  101 atcacttcaaagaaaatataaaaccatattcaatttcataataccaaaataatc-aactttaaataaagtatagaaatccaactttagtgaaaataatca 199  Q
    |||||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||    
T  7913 atcacttcaaagaaaacataaaatcatattcaatttcataatgccaaaataatcaaactttaaataaagtatagaactccaacttcagtgaaaataatca 8012  T
Q  200 aataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||| | | ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  8013 aatggttgaatcgagaactagctccatctcgttgatagccctctcctccaaatggtggcctt 8074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 664 - 563
Alignment:
Q  159 ttaaataaagtatagaaatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggc 258  Q
    ||||| |||||||| |||||||| |||  ||||||||||||| | ||| ||||||||||||| |||||||| |||||| |||||||||||||||||||||    
T  664 ttaaagaaagtata-aaatccaatttttttgaaaataatcaagtgggtgaatcgagaactagctccatctcattgatagccctctcctcctaatggtggc 566  T
Q  259 ctt 261  Q
    |||    
T  565 ctt 563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 735 - 681
Alignment:
Q  17 aatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaa 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  735 aatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagaatataaaa 681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 60338 - 60259
Alignment:
Q  183 tttagtgaaaataatcaaatagg-tcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||||||||||| |||||||  || | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  60338 tttagtgaaaacaatcaaaacgggtgaatcgagaactagctccatctcgttgatagccctctcctcctaatggtggcctt 60259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 60508 - 60422
Alignment:
Q  175 aatccaactttagtgaaaataatcaaataggtcaatcgagaactagatccatctcgttgataaccctctcctcctaatggtggcctt 261  Q
    ||||||| |||||||||||||   |||| ||| |||| |||||||| ||||||||||||||| |||||||||||||| |||||||||    
T  60508 aatccaattttagtgaaaatatcaaaatgggtgaatcaagaactagctccatctcgttgatagccctctcctcctaaaggtggcctt 60422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 60577 - 60505
Alignment:
Q  1 ttaaagagaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaatc 74  Q
    ||||||| ||||| ||||||  | |||||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  60577 ttaaagaaaatatcgaaatcaagcataatgaaaa-ggaatcgaaataatcaaatccaaatagaatataacaatc 60505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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