View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_147 (Length: 260)
Name: NF19530_low_147
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_147 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 42 - 240
Target Start/End: Complemental strand, 37080931 - 37080733
Alignment:
| Q |
42 |
taggaacttcgagtcgagtgtctgtgtgaatatggttgtgagagagttcggactttagagatgagattattggtgtttatgaatttgtgtttgcttgctt |
141 |
Q |
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| T |
37080931 |
taggaacttcgagtcgagtgtctgtgtgaatatggttctgagagagttcagactttagagatgagattattggtgtttatgaatttgtggttgcttgctt |
37080832 |
T |
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| Q |
142 |
cagtattgtgacaatggaaaagaagtttgaatggaaataataaagtgaggtgagtggtgagggtaattgtgcaacgttttaattaattcacaccgcaac |
240 |
Q |
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| T |
37080831 |
cagtattgtgacaatggaaaagaagtttgaatggaaataataaagtgaggtgagtggtgagggtaattgtgcaacgttttaattaattcacaccgcaac |
37080733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 35739661 - 35739763
Alignment:
| Q |
64 |
tgtgtgaatatggttgtgagagagttcggactttagagatgagattattggtgtttatgaatttgtgtttgcttgcttcagtattgtgacaatggaaaag |
163 |
Q |
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| T |
35739661 |
tgtgtgaatatggttgtgtgag--tttggactttagagatgagattttttatgtttatgaatttgtggttccatgcttcagttctgtgacattggaaaag |
35739758 |
T |
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| Q |
164 |
aagtt |
168 |
Q |
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| T |
35739759 |
aagtt |
35739763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 7805722 - 7805551
Alignment:
| Q |
85 |
gagttcggactttagagatgagattattggtgtttatgaatttgtgtttgcttgcttcagtattgtgacaatggaaaagaagtttgaa---------tgg |
175 |
Q |
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| T |
7805722 |
gagtttggactttagagatgggatttttggtgtttatgaattcgtagttgcttgcttcagtatcgtgacattggaaaagaagtttgaaagaagaacctcg |
7805623 |
T |
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| Q |
176 |
aaataataaagtgaggtg----------agtggtgagggtaattgtgcaacgttttaattaattcacaccgc |
237 |
Q |
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| T |
7805622 |
aaataataaagtgaggtgagttagagaaagtggtgagggtaattgtgcaacgttctgattaattcacaccgc |
7805551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 234
Target Start/End: Complemental strand, 228978 - 228809
Alignment:
| Q |
66 |
tgtgaatatggttgtgagagagttcggactttagagatgagattattggtgtttatgaatttgtgtttgcttgcttcagtattgtgacaatggaaaagaa |
165 |
Q |
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| T |
228978 |
tgtgaatatggttgtgtgag--ttcggactttagagatgagatatttggtgtttatgaatccgtggttgcttgctttagtacagtgacattggaaaagaa |
228881 |
T |
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| Q |
166 |
gtttgaa------tggaaataataaagtgaggtgagtggtgagggtaattgtgcaacgttttaattaattcacac |
234 |
Q |
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| T |
228880 |
atgagaaagaatctggaaagagtaaagtgaggtga---gtgagggtaattgtgtaaaattttgattaattcacac |
228809 |
T |
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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 36033654 - 36033752
Alignment:
| Q |
64 |
tgtgtgaatatggttgtgagagagttcggactttagagatgagattattggtgtttatgaatttgtgtttgcttgcttcagtattgtgacaatggaaaag |
163 |
Q |
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| T |
36033654 |
tgtgtgaatatggttgtgag----ttcggactatagagatgagatttttg-tgtttatgaattcgtggttgcttgcttcagtaatgtgacattgaaaaag |
36033748 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 32953596 - 32953678
Alignment:
| Q |
85 |
gagttcggactttagagatgagattattggtgtttatgaatttgtgtttgcttgcttcagtattgtgacaatggaaaagaagt |
167 |
Q |
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| T |
32953596 |
gagttcggactatagagatgagatttttggtgtttatgaattcgttgttgcttgtttcaatattgtgacattgaaaaataagt |
32953678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 27983727 - 27983630
Alignment:
| Q |
64 |
tgtgtgaatatggttgtgagagagttcggactttagagatgagattattggtg-tttatgaatttgtgtttgcttgcttcagtattgtgacaatggaaaa |
162 |
Q |
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| T |
27983727 |
tgtgtgaatatggttgtgag----tttggactttagagatgagaactttagtgatttatgagttcgtggttgcttgcttcaataatgtgacattggaaaa |
27983632 |
T |
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