View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_148 (Length: 259)
Name: NF19530_low_148
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_148 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 43116517 - 43116736
Alignment:
| Q |
18 |
ttccccacacttttttcttagaaacaaagagggtctaagcccaaagaacaaacacctaagcaacaatcaatatataagttataccatttttattttattc |
117 |
Q |
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| T |
43116517 |
ttccccacacttttttcttagaaacaaagagggtctaagcccaaagaacaaacacctaagcaacaatcaatatataagttataccatttttattttattc |
43116616 |
T |
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| Q |
118 |
aagtaatcatacctcccaattaattactttgagattttagagtgtgattctctcaaaatctcacgttcaattattctttcagttccttgtaccaaaattg |
217 |
Q |
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| T |
43116617 |
aagtaattatacctcccaattaattagtttgagattttggagtgcgattctctcaaaatctcacgttcaattattccttcagttccttgtaccaaaattg |
43116716 |
T |
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| Q |
218 |
atgggttagtttgttttctt |
237 |
Q |
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|||| ||||||||||||||| |
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| T |
43116717 |
atggattagtttgttttctt |
43116736 |
T |
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