View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_151 (Length: 257)
Name: NF19530_low_151
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_151 |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 21633 - 21857
Alignment:
| Q |
17 |
tctccacacacgcgcagctacaaactcttaaaacatttcatctggactgccaatctaatcattggagagctaatagtttttgctgttttgacacatgggc |
116 |
Q |
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| T |
21633 |
tctccacacacgcgcagctacaaactcttaaaacatttcatctcgactgccaatctaatcattggagagctaatagttttcgctgttttgacacatgggt |
21732 |
T |
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| Q |
117 |
cgaagcagcaaaacgacgtggggtcgaggatctttatctaaacttgttagaagtggaccttgtcgcctaccattttcgtttgtagaacacttgtgatttt |
216 |
Q |
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| T |
21733 |
cgaagaagcaaaacgacgtggggtcgaggatctctatctaaacttgttagaagt-gaccttgtcgcctaccattttcgtttgtagaacacttgtgatttt |
21831 |
T |
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| Q |
217 |
tgtttgttcttctacttaactatttt |
242 |
Q |
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| T |
21832 |
tctttgttcttctacttaactatttt |
21857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 33308 - 33482
Alignment:
| Q |
36 |
acaaactcttaaaacatttcatctggactgccaatctaatcattggagagctaatagtttttgctgttttgacacatgggccgaagcagcaaaacgacgt |
135 |
Q |
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| T |
33308 |
acaaactcttaaaaagtttcatctcgtctgccaatctaaaaattggagagctaatagttttcgttgttttgacacatgggttaaagcagcaaaacgacgt |
33407 |
T |
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| Q |
136 |
ggggtcgaggatctttatctaaacttgttagaagtggaccttgtcgcctaccattttcgtttgtagaacacttgtg |
211 |
Q |
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| T |
33408 |
ggggtcgaggatctctatctatgcatggtagaagt-gaccttgtcgcctaccattttcgtgtgtgaaacacttgtg |
33482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 39907 - 40103
Alignment:
| Q |
14 |
tactctccacacacgcgcagctacaaactcttaaaacatttcatctggactgccaatctaatcattggagagctaatagtttttgctgttttgacacatg |
113 |
Q |
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| T |
39907 |
tactctccacacacgcggaagaacaaactcttaaaacatttcatcttgactgccgatctaaaaactggagacctaatagttttatttgttttgacacatg |
40006 |
T |
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| Q |
114 |
ggccgaagcagcaaaacgacgtggggtcgaggatctttatctaaacttgttagaagtggaccttgtcgcctaccattttcgtttgtagaacacttgtg |
211 |
Q |
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| T |
40007 |
ggttgaagcagcaaaacgacgcggtgttgaggatctctatctatgcatgttacaagt-gatgttgtcacctaccattttcgtgtgtgaaacacttgtg |
40103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 26053971 - 26053922
Alignment:
| Q |
118 |
gaagcagcaaaacgacgtggggtcgaggatctttatctaaacttgttaga |
167 |
Q |
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| T |
26053971 |
gaagcaacaaaacgacgtggcgtggaggatctctatctacacttgttaga |
26053922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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