View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_152 (Length: 255)
Name: NF19530_low_152
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_152 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 8365550 - 8365771
Alignment:
| Q |
21 |
gcccttttgttggtatccacaggtaatgcatcaaacaggtacctcgattaaaatctcatagaaacagttcaacagaacaaaccaggtatgaggtaaccgc |
120 |
Q |
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| T |
8365550 |
gcccttttgttggtatccacaggtaatgcatcaaacaggtacctcgattaaaatctcatagaaacagttcaacagaacaaaccaggtatgaggtaaccgc |
8365649 |
T |
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| Q |
121 |
tgcttaactaggctgagtttaaccaattccaagaagctatgagtacaccaggtggagttaaaaataatgtcataaaaattaataaagagcaaaccacgat |
220 |
Q |
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| T |
8365650 |
tgcttaactaggctgagtttaaccaattccaagaagctacgagtacaccaggtggagttaaaaataatgtcgtaaaaattaagaaagagcaaaccacgat |
8365749 |
T |
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| Q |
221 |
taaagtcccgaaagtgtaactt |
242 |
Q |
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| T |
8365750 |
tatagtcccgaaagtgtaactt |
8365771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 112 - 242
Target Start/End: Original strand, 8357215 - 8357345
Alignment:
| Q |
112 |
ggtaaccgctgcttaactaggctgagtttaaccaattccaagaagctatgagtacaccaggtggagttaaaaataatgtcataaaaattaataaagagca |
211 |
Q |
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| T |
8357215 |
ggtaaccactgcttaactaggctaagtttaaccaaatccaagaagctatgagtacaccagagggagttaaaaataatgtcatgaaaattaacaaagagca |
8357314 |
T |
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| Q |
212 |
aaccacgattaaagtcccgaaagtgtaactt |
242 |
Q |
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| T |
8357315 |
aaccacaattatagtccctaaagtgtaactt |
8357345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 8352144 - 8352241
Alignment:
| Q |
70 |
aaaatctcatagaaacagttcaacagaacaaaccaggtatgaggtaaccgctgcttaactaggctgagtttaaccaattccaagaagctatgagtaca |
167 |
Q |
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| T |
8352144 |
aaaatttcatagaaacggttcaatagaacaaaccaggtatgagataaccactgcttaactaggctcagtttaaccaaattcaagaagctatgagtaca |
8352241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 7286976 - 7286911
Alignment:
| Q |
124 |
ttaactaggctg-agtttaaccaattccaagaagctatgagtacaccaggtggagttaaaaataat |
188 |
Q |
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| T |
7286976 |
ttaactaggctggagtttaaccaaaaccaagaagctatcaggacaccatgtgaagttaaaaataat |
7286911 |
T |
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