View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_153 (Length: 252)
Name: NF19530_low_153
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_153 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 46527226 - 46527000
Alignment:
| Q |
17 |
cagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagtaccagtaattgt |
116 |
Q |
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| T |
46527226 |
cagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagtaccagtaattgt |
46527127 |
T |
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| Q |
117 |
tagatgcctcaatttaaggcttttgttttgcttctacagggcatacgaacgaggtagtagctagtagtaggcttgtagtagcatttaaatttactgcata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46527126 |
tagatgcctcaatttaaggcttttgttttgcttctacagggcatacgaacgaggtagtagctagtagtaggcttgtagtagcatttaaatttactgcata |
46527027 |
T |
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| Q |
217 |
gtgcattacctcatctctctgctcctc |
243 |
Q |
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| T |
46527026 |
gtgcattacctcatctctttgttcctc |
46527000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 3441338 - 3441248
Alignment:
| Q |
17 |
cagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagtacca |
108 |
Q |
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| T |
3441338 |
cagcaggcgaatcctaaccctaccacattggcagtatccataattgaatttaaaacatgtatggacaattcac-ttgggtgattcagtacca |
3441248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 3450472 - 3450391
Alignment:
| Q |
52 |
atccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagtaccagtaattgttagatgcctcaatttaaggct |
137 |
Q |
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| T |
3450472 |
atccataattgaatttaaaacatgtatgtacaaatcaca-tgggtgattcagtacc---aattgttagatgcctcaacttatggct |
3450391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 3576510 - 3576426
Alignment:
| Q |
50 |
gtatccagaattgaatttaaa-gcatgtat-ggacaagtcacattgtgtgattcagtaccagtaattgttagatgcctcaattta |
132 |
Q |
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| T |
3576510 |
gtatccatacttgaatttaaaagcatgtataggacaagtcacattgggtgattcaataccaacaactgttagatgcctcaattta |
3576426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 3567151 - 3567103
Alignment:
| Q |
111 |
aattgttagatgcctcaatttaaggcttttgttttgcttctacagggca |
159 |
Q |
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| T |
3567151 |
aattgttagatgcctcaatttatggcttttgttttgcttccacacggca |
3567103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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