View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_158 (Length: 250)
Name: NF19530_low_158
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_158 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 45845413 - 45845646
Alignment:
| Q |
17 |
taaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845413 |
taaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacata |
45845512 |
T |
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| Q |
117 |
gccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacagcaaaaaccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845513 |
gccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacagcaaaaaccaa |
45845612 |
T |
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| Q |
217 |
agcaaacacacctaaaatgaagctacaagagagt |
250 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
45845613 |
agcaaacacacctaaaatgaagctacaagtgagt |
45845646 |
T |
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Target: scaffold0039 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 24705 - 24605
Alignment:
| Q |
16 |
ataaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacat |
115 |
Q |
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|||||||||||| || |||||||| ||||| ||||||||||||||||||||||| | || ||||| ||||||||||| ||||| || || ||||||||| |
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| T |
24705 |
ataaaaacaacctaagttgatattagcaccaactttaggccttgctgttcctctaagaacaccacagcctgttgtttgaggacagttacctagttcacat |
24606 |
T |
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| Q |
116 |
a |
116 |
Q |
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| T |
24605 |
a |
24605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 2990841 - 2990734
Alignment:
| Q |
16 |
ataaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacat |
115 |
Q |
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|||||||||||| ||||| |||||||| |||| ||| ||||| || ||||| || || || |||||| | ||||||||||||||||||||||| |||||| |
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| T |
2990841 |
ataaaaacaacctaaatttatatttgcgcctaatttcggcctcgccgttcccctcaaaacaccacaaacagttgtttgtggacaatttccaagctcacat |
2990742 |
T |
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| Q |
116 |
agccctat |
123 |
Q |
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|| ||||| |
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| T |
2990741 |
agtcctat |
2990734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 51875434 - 51875330
Alignment:
| Q |
16 |
ataaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacat |
115 |
Q |
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||||||| | || |||||||||||||||||||| |||| || || | |||||||| || |||||||| ||||||||||| ||||| |||| ||||| |
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| T |
51875434 |
ataaaaagaccccaaattgatatttgcacctaccgtaggtctagcactacctcttaaaacaccacaacccgttgtttgtgggcaattcccaatctcacaa |
51875335 |
T |
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| Q |
116 |
agccc |
120 |
Q |
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||||| |
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| T |
51875334 |
agccc |
51875330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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