View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_160 (Length: 250)
Name: NF19530_low_160
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_160 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 82099 - 81850
Alignment:
| Q |
1 |
gtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagacaagaagctctctatgtactac |
100 |
Q |
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| T |
82099 |
gtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagacaagaagctctctatgtactac |
82000 |
T |
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| Q |
101 |
tcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttggtgtgtaattggttttactta |
200 |
Q |
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| T |
81999 |
tcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttggtgtgtatttggttttactta |
81900 |
T |
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| Q |
201 |
taaaattattagaatttattatttttggtggaactcacacattttaaatg |
250 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
81899 |
taaaattattagaatttattatttttggcggaactcacacattttaaatg |
81850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 40884185 - 40884434
Alignment:
| Q |
1 |
gtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagacaagaagctctctatgtactac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40884185 |
gtttttcctctgaccctactctccttcctcttttactcattgcttaaatatcaacagttgtcagattcctttcttagacaagaagctctctatgtactac |
40884284 |
T |
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| Q |
101 |
tcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttggtgtgtaattggttttactta |
200 |
Q |
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| T |
40884285 |
tcctacaacattactttcaccttctatttttatgtcattgttcccttccttagtccttacttaattaaaacaatatttggtgtgtatttggttttactta |
40884384 |
T |
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| Q |
201 |
taaaattattagaatttattatttttggtggaactcacacattttaaatg |
250 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40884385 |
taaaattattagaatttattatttttggcggaactcacacattttaaatg |
40884434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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