View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_161 (Length: 250)
Name: NF19530_low_161
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_161 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 37 - 229
Target Start/End: Original strand, 5940351 - 5940543
Alignment:
| Q |
37 |
aaaaaacataatatcatcacttgattcatgtgtaataaaattcgacattacctctccactgcctttccctctccttttcttctaattttgctcatatttg |
136 |
Q |
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| T |
5940351 |
aaaaaacataatatcatcacttgattcatgtgtaataaaattcgacattacctctccactgcctttccctctccttttcttctaattttgctcatattgg |
5940450 |
T |
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| Q |
137 |
aagattttgtagatcgattgctttagtttttaatttcaatacctatgttgatatcaatctgggttattttgttttcctgttgatctctcagta |
229 |
Q |
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| T |
5940451 |
atgattttgtagatcgattgctttagttttcaatttcaatatctatgttgatatcaatctgggttattttgttttcctgttgatctctgagta |
5940543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5940210 - 5940242
Alignment:
| Q |
1 |
tcctggacctaatcttctccgagaactagatca |
33 |
Q |
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| T |
5940210 |
tcctggacctaatcttctccgagaactagatca |
5940242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 13017463 - 13017577
Alignment:
| Q |
101 |
ttccctctccttttctt-ctaattttgctcatatttgaagattttgtagatcgatt---gctttagtttttaatttcaatacctatgttgatatcaatct |
196 |
Q |
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| T |
13017463 |
ttccctcaccttttctttctacttttgttgttattggaagattttgtagatcaattcttgtttcagttttcaatttcaatatctccgttgatatcaatct |
13017562 |
T |
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| Q |
197 |
gggttattttgtttt |
211 |
Q |
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| T |
13017563 |
ggatcgttttgtttt |
13017577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 46177840 - 46177955
Alignment:
| Q |
101 |
ttccctctccttttctt--ctaattttgctcatatttgaagattttgtagatcgattgcttt---agtttttaatttcaatacctatgttgatatcaatc |
195 |
Q |
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||||||| ||||||||| ||| ||||| | |||| |||||||||||||||| |||| | | ||||||||||||||||| || ||||||||||||| |
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| T |
46177840 |
ttccctcaccttttcttttctacttttgttgttattggaagattttgtagatcaattgttgtttcagtttttaatttcaatatctccgttgatatcaatc |
46177939 |
T |
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| Q |
196 |
tgggttattttgtttt |
211 |
Q |
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||| | ||||||||| |
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| T |
46177940 |
tggatcgttttgtttt |
46177955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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