View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_162 (Length: 250)
Name: NF19530_low_162
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_162 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 37788903 - 37789025
Alignment:
| Q |
17 |
tatatattatgtaattgtccataccaattgagtcaaactaacgagaacgttggatatgtattcttacaaattacatccaatcatttaatgtggtatgtta |
116 |
Q |
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| T |
37788903 |
tatatactatgta-ttgtccctaccaattgagtcaaactaacgaggacgttggatatgtattcttacaaattatatccaatcatttaatgtggtatgtta |
37789001 |
T |
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| Q |
117 |
cttttaatatttgattaatttgcc |
140 |
Q |
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| T |
37789002 |
cttttaatatttgattaatttgcc |
37789025 |
T |
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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 37789058 - 37789134
Alignment:
| Q |
174 |
ttaaattaattttctcacaggatacctgttccaacaaaactccaggatactgcaaagaattctccataaggaaaact |
250 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37789058 |
ttaaattaattttctcacagtatacctgttccaacaaaactccaggatactgcgaagaattctccataaggaaaact |
37789134 |
T |
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