View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_17 (Length: 551)
Name: NF19530_low_17
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 49 - 412
Target Start/End: Original strand, 5197063 - 5197423
Alignment:
| Q |
49 |
ttctccgcgcctccaaccctctgtcatcttctcacccttctccgaccttaacaccaccagaatcgccacctcttctcttcaaagttgcaaccgcactgcc |
148 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
5197063 |
ttcttcgcgcctccaaccctctgtcatcttctcacctttctccgaccctaacaccactagaatcgccacctcttctcttcaaagttgcaaccacaccgcc |
5197162 |
T |
|
| Q |
149 |
acctctttttcctcataaccaccgccgcctgttttcaagctgttcagatctagaaatgtcacatcgccggcgatcttcttttctcccacactgtatca-n |
247 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
5197163 |
gcctcttcttcctcataaccaccgccgcctgttttcaagctgttcagatccagaaatgtcacatcgccggtgatcttcttttctcccgcactgtatcagt |
5197262 |
T |
|
| Q |
248 |
nnnnnnggttcaaatctgacgttttctagtgagacggtaagtaagtccggcggccataaggcggagggaggcagtgggttgctcggagaagagacatatc |
347 |
Q |
| |
|
|||||| |||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5197263 |
ttttttggttcagatctgacgttttctagggagacg----gtaaatccggcggccataaggcggagggaggcagtgggttgctcggagaagagacaaatc |
5197358 |
T |
|
| Q |
348 |
atatgttcatcaatatacaaacagttgcaactacatgatccattacttccttatatagtctcaaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
5197359 |
atatgttcatcaatatacaaacagttgcaactacatgatccattacttccttgtatagtctcaaa |
5197423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 451 - 533
Target Start/End: Original strand, 5197461 - 5197543
Alignment:
| Q |
451 |
aatggtaacagtggattacaaagaaagctaatgaacctcaataatggtcaattgtagtaacttaaagcaattaacagagagag |
533 |
Q |
| |
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||||||| ||| ||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||| |||| |
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| T |
5197461 |
aatggtatgagtcgattacaaagaaagctaataaacctcattaatgctcaattgcagtaacttaaagcaattaacagaaagag |
5197543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 49 - 412
Target Start/End: Original strand, 8004264 - 8004627
Alignment:
| Q |
49 |
ttctccgcgcctccaaccctctgtcatcttctcacccttctccgaccttaacaccaccagaatcgccacctcttctcttcaaagttgcaaccgcactgcc |
148 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |
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| T |
8004264 |
ttctccgcgcttccaaccctctgtcatcttctcacccttctccaaccctaacaccaccagaatcgccacctcttctcttcaa-gttgcaaccacaccgcc |
8004362 |
T |
|
| Q |
149 |
acctctttttcctcataaccaccgccgcctgttttcaagctgttcagatctagaaatgtcacatcgccggcgatcttcttttctcccacactgtatca-n |
247 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
8004363 |
gcctcttcttcctcataaccactgccgcctgttttcaagctgttcagatccggaaatgtcacatcgccggcgatcttcttttctcctgcattgtatcatt |
8004462 |
T |
|
| Q |
248 |
nnnnnnggttcaaatctgacgttttctagtgagacggtaagtaagtccggcggccataaggcggagggaggcagtgggttgctcggagaagagacatatc |
347 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004463 |
ttttttggttcagatctgacgttttctagtgagatggtaagtaagtctggcggccataaggcggagggaggcagtgggttgctcggagaagagacatatc |
8004562 |
T |
|
| Q |
348 |
atatgttcatcaatatacaaacagttgcaactacatgatccattacttccttatatagtctcaaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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|
| T |
8004563 |
ttatgttcatcaatatacaaacagttgcaactacatgatccattacttcgttgtatagtctcaaa |
8004627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 451 - 533
Target Start/End: Original strand, 8004665 - 8004747
Alignment:
| Q |
451 |
aatggtaacagtggattacaaagaaagctaatgaacctcaataatggtcaattgtagtaacttaaagcaattaacagagagag |
533 |
Q |
| |
|
||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8004665 |
aatggtagcattggattataaagaaagctaataaacctcaataatggtcaattgtagtaacttaaagcaattaacagagagag |
8004747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 343
Target Start/End: Complemental strand, 16424894 - 16424839
Alignment:
| Q |
288 |
gtaagtccggcggccataaggcggagggaggcagtgggttgctcggagaagagaca |
343 |
Q |
| |
|
|||| ||||||||||||||| ||||||| | ||||||||||||||||||||||| |
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|
| T |
16424894 |
gtaaatccggcggccataagacggagggcaacggtgggttgctcggagaagagaca |
16424839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 59 - 412
Target Start/End: Complemental strand, 55038962 - 55038617
Alignment:
| Q |
59 |
ctccaaccctctgtcatcttctcacccttctccgaccttaacaccaccagaatcgccacctcttctcttcaaagttgcaaccgcactgccacctcttttt |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| || |
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|
| T |
55038962 |
ctccaaccctctgtcatcttctcacccttctccgaccctaacaccaccagaatcgccacctcttctcttcaaagttgcaaccacaccgccgcctcttctt |
55038863 |
T |
|
| Q |
159 |
cctcataaccaccgccgcctgttttcaagctgttcagatctagaaatgtcacatcgccggcgatcttcttttctcccacactgtatcannnnnnnggttc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | | |
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| T |
55038862 |
cctcataaccaccgccgcctgttttcaagctgttcagatccagaaatgtcacatcgccggcgatcttcttttctcccgcactgtatcattttttttggt- |
55038764 |
T |
|
| Q |
259 |
aaatctgacgttttctagtgagacggtaagtaagtccggcggccataaggcggagggaggcagtgggttgctcggagaagagacatatcatatgttcatc |
358 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
55038763 |
---tctgacattttctagtgagacg----gtaattccggcggccataaggcggagggaggcagtgggttgctcggagaagagacagatcatatgttcatc |
55038671 |
T |
|
| Q |
359 |
aatatacaaacagttgcaactacatgatccattacttccttatatagtctcaaa |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
55038670 |
aatatacaaacagttgcaactacatgatccattacttccttgtatagtctcaaa |
55038617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 451 - 533
Target Start/End: Complemental strand, 55038579 - 55038497
Alignment:
| Q |
451 |
aatggtaacagtggattacaaagaaagctaatgaacctcaataatggtcaattgtagtaacttaaagcaattaacagagagag |
533 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
55038579 |
aatggtataagtggattacaaagaaagctaataaacctcattaatggtcaattgtagtaacttaaaacaattaagagagagag |
55038497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 49 - 412
Target Start/End: Original strand, 1176088 - 1176448
Alignment:
| Q |
49 |
ttctccgcgcctccaaccctctgtcatcttctcacccttctccgaccttaacaccaccagaatcgccacctcttctcttcaaagttgcaaccgcactgcc |
148 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1176088 |
ttcttcgcgcctccaaccctctgtcatcttctcacctttctccgaccctaacaccaccagaatcgccacctcttctcttcaaagttgcaaccgcaccgcc |
1176187 |
T |
|
| Q |
149 |
acctctttttcctcataaccaccgccgcctgttttcaagctgttcagatctagaaatgtcacatcgccggcgatcttcttttctcccacactgtatca-n |
247 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
1176188 |
gcctcttcttcctcataaccaccgccgcctgttttcaagctgttcagatccagaaatgtcacatcgccggtgatcttcttttctcccgcactgtatcatt |
1176287 |
T |
|
| Q |
248 |
nnnnnnggttcaaatctgacgttttctagtgagacggtaagtaagtccggcggccataaggcggagggaggcagtgggttgctcggagaagagacatatc |
347 |
Q |
| |
|
|||||| |||| |||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| || |
|
|
| T |
1176288 |
ttttttggttcagatctaacgttttctacggagacg----gtaaatccggcggccataaggccgagggaggcagtgggttgctcgaagaagagacagatt |
1176383 |
T |
|
| Q |
348 |
atatgttcatcaatatacaaacagttgcaactacatgatccattacttccttatatagtctcaaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1176384 |
atatgttcatcaatatacaaacagttgcaactacatgatccattacttccttgtatagtctcaaa |
1176448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 451 - 533
Target Start/End: Original strand, 1176486 - 1176568
Alignment:
| Q |
451 |
aatggtaacagtggattacaaagaaagctaatgaacctcaataatggtcaattgtagtaacttaaagcaattaacagagagag |
533 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
1176486 |
aatggtatgagtggactacaaagaaagctaataaacctcattaatgctcaattgcagtaacttaaagcaattaacggagagag |
1176568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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