View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_176 (Length: 238)
Name: NF19530_low_176
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_176 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 17136714 - 17136494
Alignment:
| Q |
18 |
agagacacatgtacataaaatatagtgcttgattgtttgcagggaagacttaccgattccggatatcaaatgtggggattaccacatccatcaatttcag |
117 |
Q |
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| T |
17136714 |
agagacacatgtacgtaaaatatagtgcttgattgtttgcagggaagacttaccgattccggatatcaaatgtggggattaccacatccatcaatttcag |
17136615 |
T |
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| Q |
118 |
aatccaagggcataagatgaagcttgttgaggtggaaggaagtcacactgtgcaaaacatttacgactcacttgacattcatttggggcagacgtattct |
217 |
Q |
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| T |
17136614 |
aatccaagggcataagatgaagcttgttgaggtggaaggaagtcacactgtgcaaaacatttacgactcacttgacattcatttggggcagacgtattct |
17136515 |
T |
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| Q |
218 |
gtattggttactgctgatcaa |
238 |
Q |
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| T |
17136514 |
gtattggttactgctgatcaa |
17136494 |
T |
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Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 17347135 - 17347322
Alignment:
| Q |
51 |
tgtttgcagggaagacttaccgattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggt |
150 |
Q |
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| T |
17347135 |
tgtttgcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggt |
17347234 |
T |
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| Q |
151 |
ggaaggaagtcacactgtgcaaaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaa |
238 |
Q |
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| T |
17347235 |
ggaaggaagtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaa |
17347322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 37091287 - 37091121
Alignment:
| Q |
72 |
gattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggtggaaggaagtcacactgtgca |
171 |
Q |
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| T |
37091287 |
gattccggatatcaaatgttggactcacaacttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaaggaatccacacactaca |
37091188 |
T |
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| Q |
172 |
aaacatttacgactcacttgacattcatttggggcagacgtattctgtattggttactgctgatcaa |
238 |
Q |
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| T |
37091187 |
aaacacttatgattcccttgatattcatttggggcagagttactctgtattggttactgctgatcaa |
37091121 |
T |
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