View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_178 (Length: 237)
Name: NF19530_low_178
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_178 |
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| [»] scaffold0251 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37789178 - 37789398
Alignment:
| Q |
1 |
aattcaatcctttaaactcgagagaattgttttcagggcttgaaaggtgtggtaagagttgtagactaaggtggatgaactatctaaggccagatgtcaa |
100 |
Q |
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| T |
37789178 |
aattcaaacctttaaactcgagagaattgttttcagggcttgaaaggtgtggtaagagttgtagactaaggtggatgaactatctaaggccagatgtcaa |
37789277 |
T |
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| Q |
101 |
aagagggaactttaatcaacaagaggaagagcttatcatcaaacttcatgaaaaactgggtaataggtatcaacttatcaacactatcatggcaaaatca |
200 |
Q |
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| T |
37789278 |
aagagggaacttcaatcaacaagaggaagagcttatcatcaaacttcatgaaaaactgggtaataggtatcaacttatcaacactatcatggcaaaatca |
37789377 |
T |
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| Q |
201 |
tatcttaattgttgtaaaaaa |
221 |
Q |
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| T |
37789378 |
tatcttaattgttgtaaaaaa |
37789398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 37807866 - 37808008
Alignment:
| Q |
27 |
ttgttttcagggcttgaaaggtgtggtaagagttgtagactaaggtggatgaactatctaaggccagatgtcaaaagagggaactttaatcaacaagagg |
126 |
Q |
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| T |
37807866 |
ttgtttgcaggtcttgaaaggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagagggagctttagtcatgaagaag |
37807965 |
T |
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| Q |
127 |
aagagcttatcatcaaacttcatgaaaaactgggtaataggta |
169 |
Q |
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| T |
37807966 |
aagagactatcatcaaacttcatgaaaaattgggtaataggta |
37808008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 9870 - 9949
Alignment:
| Q |
45 |
aggtgtggtaagagttgtagactaaggtggatgaactatctaaggccagatgtcaaaagagggaactttaatcaacaaga |
124 |
Q |
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| T |
9870 |
aggtgtgggaagagttgtagattgaggtggttgaattatctaaggcctaatatcaaaagaggaaactttactcaagaaga |
9949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 262109 - 262026
Alignment:
| Q |
31 |
tttcagggcttgaaaggtgtggtaagagttgtagactaaggtggatgaactatctaaggccagatgtcaaaagagggaacttta |
114 |
Q |
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| T |
262109 |
tttcaggtctttcaaggtgtgggaagagttgtagattgaggtggctgaattatctaaggcctaatatcagaagagggaacttta |
262026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 2590831 - 2590865
Alignment:
| Q |
30 |
ttttcagggcttgaaaggtgtggtaagagttgtag |
64 |
Q |
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| T |
2590831 |
ttttcagggcttcaaaggtgtggtaagagttgtag |
2590865 |
T |
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