View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19530_low_179 (Length: 237)
Name: NF19530_low_179
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_179 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 9003248 - 9003046
Alignment:
| Q |
18 |
ccttttgaaatcgtaattaattttaattgtaagacacgtattttaacttccttttaaaaactcatgaatttgatgttacctattttaacttccttttttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9003248 |
ccttttgaaatcgtaattaattttaatcgtaagacacgtattttaacttccttttaaaaactcatgaacttgatgttacctattttaacttccttttttc |
9003149 |
T |
|
| Q |
118 |
cattctatttggagaaaggaaggcttgttgttacctatagatctcatcacctaaggttgtcatgtttgatcaatcaattgattttacaactaatctattc |
217 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9003148 |
cattctatttggagaaaggaaggtttgttgttacctatagatctcatcacctaaggttgtcatgtttgatcaatcaattgattttacaactaatctattc |
9003049 |
T |
|
| Q |
218 |
atg |
220 |
Q |
| |
|
||| |
|
|
| T |
9003048 |
atg |
9003046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 2905371 - 2905469
Alignment:
| Q |
118 |
cattctatttggagaaaggaaggcttgttgttacctatagatctcatcacctaaggttgtcatgtttgatcaatcaattgattttacaactaatctatt |
216 |
Q |
| |
|
||||||| |||| |||||||| ||||||| |||| ||||||||| |||| ||||||||| || | | |||||| |||| ||||||||||||||||||| |
|
|
| T |
2905371 |
cattctagttggtgaaaggaatgcttgttattacatatagatcttctcacttaaggttgtgatttatcatcaattaattaattttacaactaatctatt |
2905469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 8548509 - 8548628
Alignment:
| Q |
98 |
tattttaacttccttttttc-cattctatttggagaaaggaaggcttgttgttacctatagatctcatcacctaaggttgtcatgtttgatcaatcaatt |
196 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||| ||||||||||||||||||| || |||||| |||| ||||||| | ||| || ||||||| || |
|
|
| T |
8548509 |
tatttaaacttcctattttggcattctatttggataaaggaaggcttgttgttaagtacagatcttctcacttaaggttatgatgatttctcaatcattt |
8548608 |
T |
|
| Q |
197 |
gattttacaactaatctatt |
216 |
Q |
| |
|
| ||||||||||||| |||| |
|
|
| T |
8548609 |
gcttttacaactaatatatt |
8548628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University