View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_180 (Length: 237)
Name: NF19530_low_180
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_180 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44949862 - 44949642
Alignment:
| Q |
1 |
acgagttagttaattacaccctgcttgacatttttctcttgcaaggaatgaaacgtttgcaagaatctgctttccctcaacggaaacaacaaaagtgtct |
100 |
Q |
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| T |
44949862 |
acgagttagttaattacaccctgcttgacatttttctcttgcaaggaatgaaacgtttgcaagaatctgctttccctcaacggaaacaacaaaagtgtct |
44949763 |
T |
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| Q |
101 |
aagtcgctgacgaatgaagaacataaactctataacctcatatgtagcagggaaaacagaggaatctcgtaaagagacatgaatagagaaataaaccttc |
200 |
Q |
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| T |
44949762 |
aagtcgctgacgaatgaagaacataaactctataacctcatatgtagcagggaaaacagaggaatctcgtaaagagacatgaatagagaaataaaccttc |
44949663 |
T |
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| Q |
201 |
ctactactgtgttgaataaat |
221 |
Q |
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| T |
44949662 |
ctactactgtgttgaataaat |
44949642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 44943929 - 44943809
Alignment:
| Q |
22 |
tgcttgacatttttctcttgcaaggaatgaaacgtttgcaagaatctgctttccctcaacggaaacaac-aaaagtgtctaagtcgctgacgaatgaaga |
120 |
Q |
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| T |
44943929 |
tgcttgacatttttctcttgaaaggaatgaaaagtttgcaagaatctgctttccgtcaacggaaacaacaaaaagtgtctaagtcgctgacgaatgaaga |
44943830 |
T |
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| Q |
121 |
acataaactctataacctcat |
141 |
Q |
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| T |
44943829 |
acatatactctataacctcat |
44943809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 6470682 - 6470613
Alignment:
| Q |
25 |
ttgacatttttctcttgcaaggaatgaaacgtttgcaagaatctgctttccctcaacggaaacaacaaaa |
94 |
Q |
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| T |
6470682 |
ttgacatttttctcttgtaaggaatgaaacgtttgcaagaatctggttcctctcaacagaaacgacaaaa |
6470613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 203
Target Start/End: Original strand, 419020 - 419178
Alignment:
| Q |
43 |
aaggaatgaaacgtttgcaagaatctgctttccctcaacggaaacaacaaaag-tgtctaagtcgctgacgaatgaagaacataaactctataacctcat |
141 |
Q |
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||||||||||||||||||||||||||| || | |||||| ||||| |||||| |||| ||||||| | |||||||| | || ||||||| |||| || |
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| T |
419020 |
aaggaatgaaacgtttgcaagaatctggttcctctcaacagaaacgacaaaaactgtc---gtcgctgccaaatgaagagcgtatactctatgaccttat |
419116 |
T |
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| Q |
142 |
atgtagcagggaaaacagaggaatctcgtaaagagacatgaatagagaaataaaccttccta |
203 |
Q |
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| T |
419117 |
acttagcaaggaaaactcagggatctcaaaaacagacatgtgaagagaaacaaaccttccta |
419178 |
T |
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