View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_183 (Length: 236)
Name: NF19530_low_183
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_183 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4405204 - 4405426
Alignment:
| Q |
1 |
aaaaataacttcgaaagataaatatccattaagggaaaaaa-gttactggtaaaaactcataatcatcaagaagctctttcgcattttgagattgtgtgc |
99 |
Q |
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||||||| |||| ||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4405204 |
aaaaatagcttcaaaagataaatatccattgaggaaaaaaaagttactgataaaaactcataatcatcaagaagctctttcgcattttgagattgtgtgc |
4405303 |
T |
|
| Q |
100 |
gagtnnnnnnn--ttaacaacacattttttaacatactcatttttactagttataatacatgtaagcttcaccaaattaaacgtgactctcatgcatttt |
197 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4405304 |
gagtaaaaaaaaattaacaacacattttttaacatactcatttttaccagttataatacatgtaagcttcaccaaattaaacgtgactctaatgcatttt |
4405403 |
T |
|
| Q |
198 |
aatcaataagagagaccgtatta |
220 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
4405404 |
aatcaataagagagaccgtatta |
4405426 |
T |
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