View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19530_low_187 (Length: 235)

Name: NF19530_low_187
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19530_low_187
NF19530_low_187
[»] chr7 (3 HSPs)
chr7 (1-220)||(4590250-4590474)
chr7 (10-129)||(26141620-26141739)
chr7 (125-220)||(4590097-4590197)
[»] chr5 (2 HSPs)
chr5 (10-134)||(34138834-34138958)
chr5 (13-129)||(15538231-15538347)
[»] chr3 (8 HSPs)
chr3 (10-134)||(22017262-22017386)
chr3 (10-134)||(22021750-22021874)
chr3 (1-129)||(16320211-16320339)
chr3 (1-129)||(18501220-18501348)
chr3 (1-129)||(5892628-5892756)
chr3 (1-129)||(18512287-18512415)
chr3 (1-129)||(6770955-6771083)
chr3 (1-128)||(5817592-5817718)
[»] scaffold0048 (2 HSPs)
scaffold0048 (10-129)||(15140-15259)
scaffold0048 (4-123)||(9209-9328)
[»] chr1 (2 HSPs)
chr1 (1-123)||(20973538-20973660)
chr1 (1-129)||(16844488-16844616)
[»] chr4 (2 HSPs)
chr4 (4-129)||(14706294-14706419)
chr4 (25-129)||(16381550-16381654)
[»] chr8 (1 HSPs)
chr8 (1-129)||(24439392-24439520)
[»] chr6 (4 HSPs)
chr6 (4-134)||(24404558-24404688)
chr6 (10-120)||(22233220-22233330)
chr6 (1-129)||(22943965-22944093)
chr6 (1-129)||(23866409-23866537)
[»] scaffold0126 (1 HSPs)
scaffold0126 (4-123)||(9927-10044)
[»] scaffold0063 (1 HSPs)
scaffold0063 (10-129)||(12819-12938)
[»] scaffold0035 (1 HSPs)
scaffold0035 (28-117)||(57235-57324)
[»] chr2 (2 HSPs)
chr2 (1-44)||(27156802-27156845)
chr2 (49-129)||(29444369-29444449)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4590474 - 4590250
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  4590474 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattgaaaaaattttgatcttacctaattgact 4590375  T
Q  101 ccaaagtcattgtttttacagataatgcatcttttaaatacttgttgacaatgtgatcagtgccaaagaacaagtaatatctct-----gaatgagatgc 195  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||     |||||||||||    
T  4590374 ccaaagtcattgtttttacagataatgtatcttttaaatacttgttgacaatgtgatcgatgccaaagaacaagtaatatctctaaaaggaatgagatgc 4590275  T
Q  196 cctataatggaattttagaaattga 220  Q
    || ||||||||||||||||||||||    
T  4590274 cccataatggaattttagaaattga 4590250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 26141739 - 26141620
Alignment:
Q  10 aatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactccaaagtca 109  Q
    ||||||||| || |||| ||| |||||| ||||||||| |||||||| ||||| ||||||||||||||||| || ||||| ||||| | |||||||||||    
T  26141739 aatgaaaatcaagttaactatgccacaactgaaaaggagttgcttgcggtaatctttgcattggaaaaattccgttcttatctaataggctccaaagtca 26141640  T
Q  110 ttgtttttacagataatgca 129  Q
    |||||||||||||| |||||    
T  26141639 ttgtttttacagatcatgca 26141620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 4590197 - 4590097
Alignment:
Q  125 atgcatcttttaaatacttgttgacaatgtgatcagtgccaaagaacaagtaatatctct-----gaatgagatgccctataatggaattttagaaattg 219  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||     ||||| |||| ||||||||||||||||||||||||    
T  4590197 atgcaccttttaaatacttgttgataatgtgatcagtgccaaagaacatgtaatatctctaagaggaatgcgatgtcctataatggaattttagaaattg 4590098  T
Q  220 a 220  Q
    |    
T  4590097 a 4590097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 34138958 - 34138834
Alignment:
Q  10 aatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactccaaagtca 109  Q
    ||||||||| || |||| ||| |||||| ||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||| | |||||||||||    
T  34138958 aatgaaaatcaagttaactatgccacaactgaaaaggagttgcttgcagtaatttttgcattggaaaaattccgttcttatctaataggctccaaagtca 34138859  T
Q  110 ttgtttttacagataatgcatcttt 134  Q
    |||||||||||||| ||||| ||||    
T  34138858 ttgtttttacagatcatgcagcttt 34138834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 15538347 - 15538231
Alignment:
Q  13 gaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactccaaagtcattg 112  Q
    |||||| || ||||||| || |||| |||||| ||||||||||| ||||| ||||| |||||||||||||| || |||||||||| |||||| || ||||    
T  15538347 gaaaatcaagttaattactctacaactgaaaaagaattgcttgcggtaatatttgcgttggaaaaatttcggtcctacctaattggctccaaggttattg 15538248  T
Q  113 tttttacagataatgca 129  Q
    | ||||||||| |||||    
T  15538247 tctttacagatcatgca 15538231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 22017262 - 22017386
Alignment:
Q  10 aatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactccaaagtca 109  Q
    ||||||||| ||||||| ||| |||||| ||||||||| |||||||| ||||| ||||||||||||||||| || ||||| ||||| | |||||||||||    
T  22017262 aatgaaaatcaaattaactatgccacaactgaaaaggagttgcttgcggtaatctttgcattggaaaaattccgttcttatctaataggctccaaagtca 22017361  T
Q  110 ttgtttttacagataatgcatcttt 134  Q
    |||||||||||||| ||||| ||||    
T  22017362 ttgtttttacagatcatgcagcttt 22017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 22021750 - 22021874
Alignment:
Q  10 aatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactccaaagtca 109  Q
    ||||||||| ||||||| ||| |||||| ||||||||| |||||||| ||||| ||||||||||||||||| || ||||| ||||| | |||||||||||    
T  22021750 aatgaaaatcaaattaactatgccacaactgaaaaggagttgcttgcggtaatctttgcattggaaaaattccgttcttatctaataggctccaaagtca 22021849  T
Q  110 ttgtttttacagataatgcatcttt 134  Q
    |||||||||||||| ||||| ||||    
T  22021850 ttgtttttacagatcatgcagcttt 22021874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 16320339 - 16320211
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    |||||||| ||||||||| || | || ||||| |||| |||||| || |||||||| ||||| |||||||||||||||||||| |||||  |||| | ||    
T  16320339 aaggttttaaatgaaaatgaagtaaactattcaacaactgaaaaagagttgcttgcggtaatatttgcattggaaaaatttcgttcttatttaataggct 16320240  T
Q  101 ccaaagtcattgtttttacagataatgca 129  Q
    ||||||||||||||||||||||| |||||    
T  16320239 ccaaagtcattgtttttacagatcatgca 16320211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 18501348 - 18501220
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    |||||||| ||||||| | || | || ||||| |||| |||||| || |||||||| ||||| |||||||||||||||||||| |||||  |||| | ||    
T  18501348 aaggttttaaatgaaagtcaagtaaactattcaacaactgaaaaagagttgcttgcggtaatatttgcattggaaaaatttcgttcttatttaataggct 18501249  T
Q  101 ccaaagtcattgtttttacagataatgca 129  Q
    ||||||||||||||||||||||| |||||    
T  18501248 ccaaagtcattgtttttacagatcatgca 18501220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 5892756 - 5892628
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    |||||||| ||||||| | || | || ||||| |||| |||||| || |||||||| ||||| ||||| |||||||||||||| |||||  |||| | ||    
T  5892756 aaggttttaaatgaaagtcaagtaaactattcaacaactgaaaaagagttgcttgcggtaatatttgcgttggaaaaatttcgttcttatttaataggct 5892657  T
Q  101 ccaaagtcattgtttttacagataatgca 129  Q
    ||||||||||||||||||||||| |||||    
T  5892656 ccaaagtcattgtttttacagatcatgca 5892628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 18512415 - 18512287
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    |||||||| ||||||| | || | || ||||| |||| |||||| || |||||||| ||||| ||||| |||||||||||||| |||||  |||| | ||    
T  18512415 aaggttttaaatgaaagtcaagtaaactattcaacaactgaaaaagagttgcttgcggtaatatttgctttggaaaaatttcgttcttatttaataggct 18512316  T
Q  101 ccaaagtcattgtttttacagataatgca 129  Q
    ||||||||||||||||||||||| |||||    
T  18512315 ccaaagtcattgtttttacagatcatgca 18512287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 6771083 - 6770955
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    |||||||| ||||||||  || |||||||||| || | ||| || || ||||||||| |||| |||||  ||||||||||||| ||||| || ||||  |    
T  6771083 aaggttttaaatgaaaaccaagttaattattcaactactgagaaagagttgcttgctataatatttgctctggaaaaatttcgctcttatctcattggtt 6770984  T
Q  101 ccaaagtcattgtttttacagataatgca 129  Q
    |||| || ||||||||||||||| |||||    
T  6770983 ccaaggttattgtttttacagatcatgca 6770955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 5817718 - 5817592
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    ||||||||||||||||||||| | ||||||||||| | | || | |||||| ||| |||||||| ||||||| ||||| ||| || |||| |||| |  |    
T  5817718 aaggttttgaatgaaaataaagtcaattattccactact-aagaagaattgtttgttgtaatttctgcattgaaaaaacttctattttacttaatcgttt 5817620  T
Q  101 ccaaagtcattgtttttacagataatgc 128  Q
    |||| || ||||| ||||||||| ||||    
T  5817619 ccaaggttattgtctttacagatcatgc 5817592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 15140 - 15259
Alignment:
Q  10 aatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactccaaagtca 109  Q
    ||||||||| || |||| ||| |||||| ||||||||| |||||||| ||||| ||||||||||||||||| || ||||| ||||| | |||||||||||    
T  15140 aatgaaaatcaagttaactatgccacaactgaaaaggagttgcttgcagtaatatttgcattggaaaaattccgttcttatctaataggctccaaagtca 15239  T
Q  110 ttgtttttacagataatgca 129  Q
    |||||||||||||| |||||    
T  15240 ttgtttttacagatcatgca 15259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 9209 - 9328
Alignment:
Q  4 gttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactcca 103  Q
    ||||| || |||||| || |||| ||| |||||| ||||||||| || ||||  ||||| |||||||||||||||||||| ||||| ||||| | |||||    
T  9209 gttttaaacgaaaatcaagttaaatatgccacaactgaaaaggagtttcttgtggtaatctttgcattggaaaaatttcgttcttatctaataggctcca 9308  T
Q  104 aagtcattgtttttacagat 123  Q
    ||||||||||||||||||||    
T  9309 aagtcattgtttttacagat 9328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 20973538 - 20973660
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    |||||||| || |||||| || | || |||||||||| |||||||||||||||||| ||||| |||||||||||||||||| | |||||  ||||||  |    
T  20973538 aaggttttaaacgaaaatcaagtaaactattccacaactgaaaaggaattgcttgcagtaatatttgcattggaaaaatttagttcttatttaattggtt 20973637  T
Q  101 ccaaagtcattgtttttacagat 123  Q
    |||||||||||||||||||||||    
T  20973638 ccaaagtcattgtttttacagat 20973660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 16844616 - 16844488
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    |||||||| ||||||| | || | || ||||| |||| |||||| || |||||||| ||||| |||||||||||||||||||| |||||  |||| | ||    
T  16844616 aaggttttaaatgaaagtcaagtaaactattcaacaactgaaaaagagttgcttgcggtaatatttgcattggaaaaatttcgttcttatttaataggct 16844517  T
Q  101 ccaaagtcattgtttttacagataatgca 129  Q
    ||||||||||||||||||||||| |||||    
T  16844516 ccaaagtcattgtttttacagatcatgca 16844488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 14706294 - 14706419
Alignment:
Q  4 gttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactcca 103  Q
    ||||| ||||||||| || | || ||||| |||| |||||||||||||||||| ||||| |||||||||||||||||| | |||||  |||| | |||||    
T  14706294 gttttaaatgaaaatcaagtaaactattcaacaactgaaaaggaattgcttgcggtaatatttgcattggaaaaattttgttcttatttaataggctcca 14706393  T
Q  104 aagtcattgtttttacagataatgca 129  Q
    |||||||||||||||||||| |||||    
T  14706394 aagtcattgtttttacagatcatgca 14706419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 16381654 - 16381550
Alignment:
Q  25 aattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactccaaagtcattgtttttacagata 124  Q
    ||||||||||||| ||||||||| |||||||| ||||| |||||||||||||| ||| | ||||| ||||| | |||||||||||||||||||| ||||     
T  16381654 aattattccacaactgaaaaggagttgcttgcagtaatctttgcattggaaaagttttgttcttatctaataggctccaaagtcattgtttttatagatc 16381555  T
Q  125 atgca 129  Q
    |||||    
T  16381554 atgca 16381550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 24439392 - 24439520
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    |||||||| ||||||| | || | || ||||| |||| |||||| || |||||||| ||||| |||||||||||||||||||| |||||  |||| | ||    
T  24439392 aaggttttaaatgaaagtcaagtaaactattcaacaactgaaaaagagttgcttgcagtaatatttgcattggaaaaatttcgttcttatttaataggct 24439491  T
Q  101 ccaaagtcattgtttttacagataatgca 129  Q
    ||||||||||||||||||||||| |||||    
T  24439492 ccaaagtcattgtttttacagatcatgca 24439520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 24404558 - 24404688
Alignment:
Q  4 gttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactcca 103  Q
    ||||| ||||||||| || |||| ||| | |||| |||||| || |||||||| ||||| ||||||||||||||| |||| ||||| ||||| | |||||    
T  24404558 gttttaaatgaaaatcaagttaactatgcgacaactgaaaaagagttgcttgcggtaatctttgcattggaaaaagttcgttcttatctaataggctcca 24404657  T
Q  104 aagtcattgtttttacagataatgcatcttt 134  Q
    |||||||||| ||||||||| ||||| ||||    
T  24404658 aagtcattgtgtttacagatcatgcagcttt 24404688  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 22233220 - 22233330
Alignment:
Q  10 aatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactccaaagtca 109  Q
    ||||||||| || ||||||| || |||| |||||| ||||||||||| ||||| ||||| |||||||||||| | || |||||||||| |||||| || |    
T  22233220 aatgaaaatcaagttaattactctacaactgaaaaagaattgcttgcggtaatatttgcgttggaaaaattttggtcctacctaattggctccaaggtta 22233319  T
Q  110 ttgtttttaca 120  Q
    |||||||||||    
T  22233320 ttgtttttaca 22233330  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 22943965 - 22944093
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    |||||||| ||||||| | || | || ||||| |||| |||||| || |||||||| ||||| ||||||||||||||||||||  ||||  |||| | ||    
T  22943965 aaggttttaaatgaaagtcaagtaaactattcaacaactgaaaaagagttgcttgcggtaatatttgcattggaaaaatttcgtccttatttaataggct 22944064  T
Q  101 ccaaagtcattgtttttacagataatgca 129  Q
    ||||||| ||||||||||||||| |||||    
T  22944065 ccaaagttattgtttttacagattatgca 22944093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 23866409 - 23866537
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgact 100  Q
    |||||||| ||||||| | || | || ||||| |||| |||||| || |||||||| ||||| ||||||||||||||||||||  ||||  |||| | ||    
T  23866409 aaggttttaaatgaaagtcaagtaaactattcaacaactgaaaaagagttgcttgcggtaatatttgcattggaaaaatttcgtccttatttaataggct 23866508  T
Q  101 ccaaagtcattgtttttacagataatgca 129  Q
    ||||||| ||||||||||||||| |||||    
T  23866509 ccaaagttattgtttttacagattatgca 23866537  T

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Target: scaffold0126 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 10044 - 9927
Alignment:
Q  4 gttttgaatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactcca 103  Q
    ||||| ||||||||| || |||| ||| |||||| |||||| || |||||||| ||  | |||||||||||||||||||| ||||| ||||| | |||||    
T  10044 gttttaaatgaaaatcaagttaactatgccacaactgaaaaagagttgcttgcggt--tctttgcattggaaaaatttcgttcttatctaataggctcca 9947  T
Q  104 aagtcattgtttttacagat 123  Q
    ||||||||||||||||||||    
T  9946 aagtcattgtttttacagat 9927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 12938 - 12819
Alignment:
Q  10 aatgaaaataaaattaattattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactccaaagtca 109  Q
    ||||||||| || ||||||| || |||| |||||| ||||| ||||| ||||| ||||| |||||||||||||| || |||||||||| |||||| || |    
T  12938 aatgaaaatcaagttaattactctacaactgaaaaagaatttcttgcggtaatatttgcgttggaaaaatttcggtcctacctaattggctccaaggtta 12839  T
Q  110 ttgtttttacagataatgca 129  Q
    |||| ||||||||| |||||    
T  12838 ttgtctttacagatcatgca 12819  T

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Target: scaffold0035 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 57235 - 57324
Alignment:
Q  28 tattccacaattgaaaaggaattgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactccaaagtcattgttttt 117  Q
    |||||||||| |||||||||||| ||||| ||||| || ||||||||||| ||||| ||||| ||||| | |||||||||||||||||||    
T  57235 tattccacaactgaaaaggaattacttgcagtaatcttcgcattggaaaagtttcgttcttatctaataggctccaaagtcattgttttt 57324  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27156802 - 27156845
Alignment:
Q  1 aaggttttgaatgaaaataaaattaattattccacaattgaaaa 44  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  27156802 aaggttttgaatgaaaattaaattaattattccacaactgaaaa 27156845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 29444449 - 29444369
Alignment:
Q  49 ttgcttgctgtaatttttgcattggaaaaatttcgatcttacctaattgactccaaagtcattgtttttacagataatgca 129  Q
    ||||||||| |||| ||||| |||||||||||||| ||||| || ||||  ||||| || ||| ||||||||||| |||||    
T  29444449 ttgcttgctataatatttgctttggaaaaatttcgctcttatctcattggttccaaggttattatttttacagatcatgca 29444369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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