View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_195 (Length: 221)
Name: NF19530_low_195
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_195 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 13146782 - 13146572
Alignment:
| Q |
1 |
ttaacaacactgcttgatgatagcattggtgccctcattgtctctctcttctcaaccctaatttcgtgtgcctct--tattgatcgaatgcttggtttga |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||| |
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| T |
13146782 |
ttaacaacactgcttgatgatagcattggtgccctcattgtctctctcttctcaaccctaatttcgtgagtctctcttattgatggaatgcttggtttga |
13146683 |
T |
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| Q |
99 |
gtcatggtaattttactttggtttcgttctactttatgatatacttacatattgaatttaatggtgatatagtgtttggacctttgatagccaatggtta |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
13146682 |
gtcatggtaattttactttggtttcgttctactttatgatatacttacatattgaatttaaaggtgatatagtgtttggacctttgatagctaatggtta |
13146583 |
T |
|
| Q |
199 |
tgacctatgct |
209 |
Q |
| |
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||||||||||| |
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| T |
13146582 |
tgacctatgct |
13146572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 24511272 - 24511156
Alignment:
| Q |
91 |
tggtttgagtcatggtaattttactttggtttcgttctactttatgatatacttacatattgaatttaatggtgatatagtgtttggacctttgatagcc |
190 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |
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| T |
24511272 |
tggtttgagtcatggtaattttactttggttacgttctactttatgatatacttacatattgaatttaaatgtgatatattgtttgcacctttgatagct |
24511173 |
T |
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| Q |
191 |
aatggttatgacctatg |
207 |
Q |
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||| ||||||||||||| |
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| T |
24511172 |
aatagttatgacctatg |
24511156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 24510068 - 24510136
Alignment:
| Q |
139 |
atacttacatattgaatttaatggtgatatagtgtttggacctttgatagccaatggttatgacctatg |
207 |
Q |
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| T |
24510068 |
atacttacatattgaatttaaatgtgatatagtgtttggacctttgatagctaatggttatgacctatg |
24510136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 24509334 - 24509387
Alignment:
| Q |
91 |
tggtttgagtcatggtaattttactttggtttcgttctactttatgatatactt |
144 |
Q |
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| T |
24509334 |
tggtttgagtcatggtaattttactttggtttcgttccactttatgatatactt |
24509387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 19400750 - 19400814
Alignment:
| Q |
94 |
tttgagtcatggtaattttactttggtttcgttctactttatgatatacttacatattgaatttaa |
159 |
Q |
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| T |
19400750 |
tttgaatcatggta-ttttaatttggtttcgttctactttattatatacataaatattgaatttaa |
19400814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 15162727 - 15162677
Alignment:
| Q |
91 |
tggtttgagtcatggtaattttactttggtttcgttctactttatgatata |
141 |
Q |
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|||||| | |||||||||||||||||||||||| |||||| |||||||||| |
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| T |
15162727 |
tggttttaatcatggtaattttactttggtttcattctacattatgatata |
15162677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 46632358 - 46632293
Alignment:
| Q |
124 |
gttctactttatgatatacttacatattgaatttaatggtgatatagtg-tttggacctttgatagc |
189 |
Q |
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|||||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||| |||| |
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| T |
46632358 |
gttctactttatgatatagatacatattgaattatat-gtgatatagtgttttggacctttggtagc |
46632293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 23545238 - 23545205
Alignment:
| Q |
30 |
tgccctcattgtctctctcttctcaaccctaatt |
63 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
23545238 |
tgccctcgttgtctctctcttctcaaccctaatt |
23545205 |
T |
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