View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_2 (Length: 925)
Name: NF19530_low_2
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 10 - 650
Target Start/End: Complemental strand, 52183596 - 52182956
Alignment:
| Q |
10 |
catcatcataagcataactgtacgcagagggacacgcagacttgaacatctctgagtactgtgttggactgcaactctgtggactcgaatgttcaccggt |
109 |
Q |
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| T |
52183596 |
catcatcataagcataactgtacgcagagggacacgcagacttgaacatctctgagtactgtgttgaactgcaactctgtggactcgaatgttcaccggt |
52183497 |
T |
|
| Q |
110 |
gcaacaaaattcctcggttttaaacgctgcacacgcactcttacaggccaccaccgaaccccctacctctgttacctgcaactccgctggacaatgactt |
209 |
Q |
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| T |
52183496 |
acaacaaaattcctcggtattaaacgctgcacacgcactcttacaggccaccaccgaaccccctacctctgttacctgcaactccgctggacaatgactg |
52183397 |
T |
|
| Q |
210 |
ttcaaatctgcaacacaacctgcatactgacaatcacctgttcctctggttgcttgtatccctatcccgacattgtaaccatccaccaaactaacgtcat |
309 |
Q |
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| T |
52183396 |
ttcaaatccgcaacacaacctgcatactgacaatcacctgttcctctggttgcttgtatccctatcccgacattgtaaccatccaccaaactaacgtcat |
52183297 |
T |
|
| Q |
310 |
agaagtctttatctccactcacgcttccgatcgtaaattccgccaacgtcactggaggagcacctccaccattgcatttcaatcctccagtgcagtctcc |
409 |
Q |
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| T |
52183296 |
agaagtctttatctccactcacgcttccgatcgtaaattccgccaacgtcactggaggagcacctccaccattgcatttcaatcctccggtgcagtctcc |
52183197 |
T |
|
| Q |
410 |
ggtgatgcaattcccgttaccagcaccgtcgaagttgcagccggttctaccccagaaacgtccagaccagcctggcggagcagtgacgtcaaaagacgat |
509 |
Q |
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| T |
52183196 |
ggtgatgcaattcccgttaccagcaccgtcgaagttgcagccggttctaccccagaaacgtccagaccagcctggcggagcagtgacgtcaaaagacgat |
52183097 |
T |
|
| Q |
510 |
ccttgcggcagagaaaatcccccgtcgccgagaagttcagcacggttgccagaaagtgttcccggccagattgtgttgttgcaacggttttctatggtaa |
609 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52183096 |
cctggcggcagagaaaatcccccgtcgccgagaagttcagcaccgttgccagaaagtgttcccggccagattgtgttgttgcaacggttttctatggtaa |
52182997 |
T |
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| Q |
610 |
acattgtccccgaagctacattacctgcaaataaaaccata |
650 |
Q |
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| T |
52182996 |
acattgtccccgaagctacattacctgcaaataaaaccata |
52182956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 685 - 910
Target Start/End: Complemental strand, 52182927 - 52182703
Alignment:
| Q |
685 |
gacatggaacgtaaaatcagtgttaaatttcttgttcacctagtagaagcagcagaaggatgatgaatggaaatgtgtttgagttagtggtaagagccat |
784 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52182927 |
gacatggaacgtaaaatcagtgttaaatttcttgttcacctagtagaagcagcagaaggatgatgaatggaaatgtgtttgagttagtggtaagagccat |
52182828 |
T |
|
| Q |
785 |
gagttttgtgaatgttcttttgtttgatagtattttgaagttagatttggaagagacttgagagggtaaacagagttgaagttgcggtgtgtccactgac |
884 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
52182827 |
gagttttgtgaatgttcttttgtttgatagtactttgaagttagatttggaagagacttgagagggt-aacagagttgaagttgtggtgtgtccactgac |
52182729 |
T |
|
| Q |
885 |
tgcattgaagaatttatagttacaat |
910 |
Q |
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|||||||||||||||||||||||||| |
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| T |
52182728 |
tgcattgaagaatttatagttacaat |
52182703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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