View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_200 (Length: 218)
Name: NF19530_low_200
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_200 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 21196274 - 21196072
Alignment:
| Q |
1 |
agactataaaatattacacattttcgacaagttagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgctgctgtctaacat |
100 |
Q |
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|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21196274 |
agactataaaatattacacatttttgattaattagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgctgctgtctaacat |
21196175 |
T |
|
| Q |
101 |
aacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcatcggattcaccctcaccagtgtact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21196174 |
aacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcttcggattcaccctcaccagtgtact |
21196075 |
T |
|
| Q |
201 |
ttc |
203 |
Q |
| |
|
||| |
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|
| T |
21196074 |
ttc |
21196072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27252023 - 27251821
Alignment:
| Q |
1 |
agactataaaatattacacattttcgacaagttagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgctgctgtctaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27252023 |
agactataaaatattacacatttttgaataattagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgctgctgtctaacat |
27251924 |
T |
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| Q |
101 |
aacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcatcggattcaccctcaccagtgtact |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27251923 |
aacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcaccagtgtact |
27251824 |
T |
|
| Q |
201 |
ttc |
203 |
Q |
| |
|
||| |
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|
| T |
27251823 |
ttc |
27251821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 27268721 - 27268655
Alignment:
| Q |
137 |
taagagtagcctttgacgaacaattccttcttggcttcatcggattcaccctcaccagtgtactttc |
203 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
27268721 |
taagagtatcctttgacaaacaattccttcttggcttcctcagattcaccctcaccagtgtactttc |
27268655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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