View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_204 (Length: 206)
Name: NF19530_low_204
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_204 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 25639580 - 25639749
Alignment:
| Q |
21 |
aaacaaaagcaacaacacaaagatactcaacaatgtgaagtacttagcgttattagtaacaaccaaccacatctaaaattcttaatcaaattcggaattg |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25639580 |
aaacaaaagcaacaacacaaagatactcaacaatgtgaagtacttagcgttattagtaacaaccaaccacatctaaaattcttgatcaaattcggaattg |
25639679 |
T |
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| Q |
121 |
aattttactagatctgaaattctaaattgaaatgtcaaaatcacatcaaattctacaaatctgaattcct |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25639680 |
aattttactagatctgaaattctaaattgaaatgtcaaaatcacatcaaattctacaaatctgaattcct |
25639749 |
T |
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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 42405286 - 42405358
Alignment:
| Q |
21 |
aaacaaaagcaacaacacaaagatactcaacaatgtgaagtacttagcgttattagtaacaaccaaccacatc |
93 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||| |||||| ||||||| ||||||||| |||||| |
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| T |
42405286 |
aaacaaaagcaacaccacaaagatactcaacaacgtgaagttcttagcattattagcaacaaccaatcacatc |
42405358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 37399227 - 37399264
Alignment:
| Q |
31 |
aacaacacaaagatactcaacaatgtgaagtacttagc |
68 |
Q |
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||||||||| ||||||||||| |||||||||||||||| |
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| T |
37399227 |
aacaacacagagatactcaaccatgtgaagtacttagc |
37399264 |
T |
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