View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_22 (Length: 504)
Name: NF19530_low_22
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 124 - 441
Target Start/End: Complemental strand, 43835515 - 43835200
Alignment:
| Q |
124 |
cctcttctattctaagtgctcacctatttattttgataggcataccattggcatactgtcgataactctggaaatgacactgtttcatcataaaactatt |
223 |
Q |
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| T |
43835515 |
cctcttcttttctaactgtgcccctgtttattttgataggcataccatcggcatattgtcgataactctggaaatgataatatttcatcagaaaactctt |
43835416 |
T |
|
| Q |
224 |
tttcggaatgtnnnnnnntttggctgttcaactttctggaacttttactggtgctgcccggaacaatcataagtcagacattttaaaacttgtcaaggat |
323 |
Q |
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| T |
43835415 |
tctcagaatgtaaaaa--tctggctgttcagctttctggaacttttattggtgctgcccggaacaagtacaagtctgacattttaaaacttgtcaaggat |
43835318 |
T |
|
| Q |
324 |
ggtattgaatatgcttttgtagatgctccaaaacatttgtcttttctggaatcagcagtggcccattttttgtcaaaactccatgcatcagatgtgttgg |
423 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| |||||| |||||||||||| ||||||||||||||||| |
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| T |
43835317 |
ggtattgaatatgcttttgtagatgctccaaaacaattgtcttttctggaagcagctgtggttcattttgtgtcaaaactccctgcatcagatgtgttgg |
43835218 |
T |
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| Q |
424 |
aaatgtgagtttgcttct |
441 |
Q |
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|||||||||||||||||| |
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| T |
43835217 |
aaatgtgagtttgcttct |
43835200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 97 - 319
Target Start/End: Original strand, 40574428 - 40574648
Alignment:
| Q |
97 |
ctggaagttggctgatatagtggctctcctcttctattctaagtgctcacctatttattttgataggcataccattggcatactgtcgataactctggaa |
196 |
Q |
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| T |
40574428 |
ctggatgttggctgatatattggatcccctctgcttttctaagtgctcacctatttattttgatacgcataccattgtcatactgtcgataactctggag |
40574527 |
T |
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| Q |
197 |
atgacactgtttcatcataaaactatttttcggaatgtnnnnnnntttggctgttcaactttctggaacttttactggtgctgcccggaacaatcataag |
296 |
Q |
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| T |
40574528 |
atgacactatttcatcagaaaactatttttcggaatgt--aaaaatttggctgttcagctttctggaacttttattgttgctgccgggaacaagcataag |
40574625 |
T |
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| Q |
297 |
tcagacattttaaaacttgtcaa |
319 |
Q |
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||| ||||||||||||||||||| |
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| T |
40574626 |
tcaaacattttaaaacttgtcaa |
40574648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 352 - 488
Target Start/End: Original strand, 40574650 - 40574786
Alignment:
| Q |
352 |
caaaacatttgtcttttctggaatcagcagtggcccattttttgtcaaaactccatgcatcagatgtgttggaaatgtgagtttgcttcttattgttact |
451 |
Q |
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||||||||||||||||||||||| | |||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40574650 |
caaaacatttgtcttttctggaagcggcagtgatccattttgtgtccaaactccttgcatcagatgtgttggaaatgtgagtttgcttcttattgttagt |
40574749 |
T |
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| Q |
452 |
gccattcagaaatatttgcttttgtgcacattctaac |
488 |
Q |
| |
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| T |
40574750 |
gctattcagaaatatttgcttctgtgcacattctaac |
40574786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 161 - 427
Target Start/End: Complemental strand, 18143525 - 18143261
Alignment:
| Q |
161 |
aggcataccattggcatactgtcgataactctggaaatgacactgtttcatcataaaactatttttcggaatgtnnnnnnntttggctgttcaactttct |
260 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| | | |||||| |||||| ||| || |||||| ||||||||| || ||||| |
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| T |
18143525 |
aggcataccaccggcatactgtcgataactctggaaatgacgatatgtcatcagaaaactctttctcagaatgtaaaaa--tttggctgtccagatttct |
18143428 |
T |
|
| Q |
261 |
ggaacttttactggtgctgcccggaacaatcataagtcagacattttaaaacttgtcaaggatggtattgaatatgcttttgtagatgctccaaaacatt |
360 |
Q |
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|||| | || ||||||||||||||||| | |||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| |
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| T |
18143427 |
agaacctatatcggtgctgcccggaacaagtacaagtcagacattttaaaacttgtcaacggtggtattgaatatgcttttgaagatgctccaaaacatt |
18143328 |
T |
|
| Q |
361 |
tgtcttttctggaatcagcagtggcccattttttgtcaaaactccatgcatcagatgtgttggaaat |
427 |
Q |
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| T |
18143327 |
tgtcttttctagaagcggcagtgatccattttgtgtcaaaactccctgcatcagatgtgttggaaat |
18143261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 161 - 427
Target Start/End: Original strand, 18222139 - 18222403
Alignment:
| Q |
161 |
aggcataccattggcatactgtcgataactctggaaatgacactgtttcatcataaaactatttttcggaatgtnnnnnnntttggctgttcaactttct |
260 |
Q |
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|||||||||| |||||||||||||||||||||||||||| | | |||||| ||||| ||| || |||||| | |||||||||| |||||| |
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| T |
18222139 |
aggcataccaccggcatactgtcgataactctggaaatgatgatatgtcatcagaaaaccttttctcagaatgtaaaaa--tctggctgttcagctttct |
18222236 |
T |
|
| Q |
261 |
ggaacttttactggtgctgcccggaacaatcataagtcagacattttaaaacttgtcaaggatggtattgaatatgcttttgtagatgctccaaaacatt |
360 |
Q |
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|||| | | |||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18222237 |
agaacctacatcggtggtgcccggaacaagtacaagtcagaaattttaaaacttgtcaaggatggtattgaatatgcttttgaagatgctccaaaacatt |
18222336 |
T |
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| Q |
361 |
tgtcttttctggaatcagcagtggcccattttttgtcaaaactccatgcatcagatgtgttggaaat |
427 |
Q |
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|||||||||||||| | ||||||| ||||||| | ||||||||| ||||||||||||||||||||| |
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| T |
18222337 |
tgtcttttctggaagcggcagtggtccattttgcggcaaaactccctgcatcagatgtgttggaaat |
18222403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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