View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_23 (Length: 500)
Name: NF19530_low_23
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Complemental strand, 21240393 - 21239930
Alignment:
| Q |
17 |
atatttgtcaaccttgtacaagccatcatatgtgtagactttacgagtgtaactgctacttgaattatgacctcgaatcacccttactggcacttcttgc |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21240393 |
atatttgtcaaccttgtacaatccatcatatgtgtagactttacgagtgtaacttctacttgaattatgacctcgaatcacccttactggcacttcttgc |
21240294 |
T |
|
| Q |
117 |
ttgcagcagttcttgagtgctaaattaccccgctccaacttttgatcttgaatttgacgcttattaccagtcagattatgcccaccttgaccagtgtaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21240293 |
ttgcagcagttcttgagtgctaaattaccccgctccaacttttgatcttgaatttgacgcttattaccagtcagattatgcccaccttgaccagtgtaca |
21240194 |
T |
|
| Q |
217 |
caacattctcagcattatccagatcatcctcatacatgcctgaaataacaatggccacagcaactgggagattgagcttgtacgttttagaataagattt |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21240193 |
caacatcctcagcattatccagatcatcctcatacatgcctgaaataacaatggccacagcaactgggagattgagcttgtacattttagaataagattt |
21240094 |
T |
|
| Q |
317 |
gccgataaaatcaatgccatttaaccagtggctatgaaaaccaactgcaaccatttcagcacgagaatagaactgatatccaacctctatgcctggaatg |
416 |
Q |
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| T |
21240093 |
gccgataaaatcaatgccatttaaccaatggctatgaaaaccaactgcaaccatttcagcacgagaatagaactgatatccaacctcaatgcctggaatg |
21239994 |
T |
|
| Q |
417 |
ctgccaattcttttgccagggtatagtatctcattattttgcatcatcttggttatgactttca |
480 |
Q |
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| T |
21239993 |
ctgccaattcttttgccagggtagagtatctcattattttgcatcatcttggttatgactttca |
21239930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 21288317 - 21288778
Alignment:
| Q |
19 |
atttgtcaaccttgtacaagccatcatatgtgtagactttacgagtgtaactgctacttgaattatgacctcgaatcacccttactggcacttcttgctt |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21288317 |
atttgtcaaccttgtacaaaccatcatatgtgtagactttacgagtgtaactactacttgaattatgacctcgaatcacccttactggcacttcttgctt |
21288416 |
T |
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| Q |
119 |
gcagcagttcttgagtgctaaattaccccgctccaacttttgatcttgaatttgacgcttattaccagtcagattatgcccaccttgaccagtgtacaca |
218 |
Q |
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| T |
21288417 |
gcagcagttcttgagtgctaaattaccccgctccaacttttgatcttgaatttgacgcttattaccagtcagattatgcccaccttgaccagtgtacaca |
21288516 |
T |
|
| Q |
219 |
acattctcagcattatccagatcatcctcatacatgcctgaaataacaatggccacagcaactgggagattgagcttgtacgttttagaataagatttgc |
318 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21288517 |
acatcttcagcattatccagatcatcctcataaatgcctgaaataacaatggccacagcaactgggagattgagcttgtacgttttagaataagatttgc |
21288616 |
T |
|
| Q |
319 |
cgataaaatcaatgccatttaaccagtggctatgaaaaccaactgcaaccatttcagcacgagaatagaactgatatccaacctctatgcctggaatgct |
418 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21288617 |
cgataaaatcaatgccatttaaccaatggctatgaaaaccaactgcaaccatttcagcacgagaatagaactgatatccaacctctatgcctggaatgct |
21288716 |
T |
|
| Q |
419 |
gccaattcttttgccagggtatagtatctcattattttgcatcatcttggttatgactttca |
480 |
Q |
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| T |
21288717 |
gccaattcttttgccagggtatagtatctcattattttgcatcatcttggttatggctttca |
21288778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 128 - 296
Target Start/End: Original strand, 32424007 - 32424175
Alignment:
| Q |
128 |
cttgagtgctaaattaccccgctccaacttttgatcttgaatttgacgcttattaccagtcagattatgcccaccttgaccagtgtacacaacattctca |
227 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
32424007 |
cttgagtgctaaattaccccgctccaacttttgatcttgaatttgacgcttattaccggtcaaattatgcccaccttgaccagtgtacacaacatcctca |
32424106 |
T |
|
| Q |
228 |
gcattatccagatcatcctcatacatgcctgaaataacaatggccacagcaactgggagattgagcttg |
296 |
Q |
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| T |
32424107 |
gcattatccagatcatcttcatacatgcctgaaataacaattgccacagcaactgggagtttgagcttg |
32424175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 299 - 410
Target Start/End: Original strand, 32424366 - 32424477
Alignment:
| Q |
299 |
cgttttagaataagatttgccgataaaatcaatgccatttaaccagtggctatgaaaaccaactgcaaccatttcagcacgagaatagaactgatatcca |
398 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32424366 |
cgttttggaataagattggccgataaaatcaatgccatttaaccagtggctatgaaaaccaactgcaaccatttcagcacgagaatagaactgatatcca |
32424465 |
T |
|
| Q |
399 |
acctctatgcct |
410 |
Q |
| |
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||||| |||||| |
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| T |
32424466 |
acctcaatgcct |
32424477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 32422526 - 32422608
Alignment:
| Q |
27 |
accttgtacaagccatcatatgtgtagactttacgagtgtaactgctacttgaattatgacctcgaatcacccttactggcac |
109 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| |
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| T |
32422526 |
accttgtacaagccatcatatgtatagactttacgagtgtaactgctacgtgagtcatgacctcgaatcacccttactggcac |
32422608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 408 - 465
Target Start/End: Original strand, 32424657 - 32424714
Alignment:
| Q |
408 |
cctggaatgctgccaattcttttgccagggtatagtatctcattattttgcatcatct |
465 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |
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| T |
32424657 |
cctggaatgctgccaattcttttgtcagggtacagtatctccttattttgcatcatct |
32424714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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