View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19530_low_27 (Length: 485)
Name: NF19530_low_27
Description: NF19530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19530_low_27 |
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| [»] chr2 (15 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 8404148 - 8403683
Alignment:
| Q |
17 |
agcatctaggtggtggccatgtccaaagaaaattactggattgaacaataagatggagattaataatgagagcaataatgggtggaatttggaattggaa |
116 |
Q |
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|||||||| |||||||||||||| ||||||||| ||| ||| ||||| |||||||||||||||| ||| | |||||||| ||||||||||| |||||| |
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| T |
8404148 |
agcatctatgtggtggccatgtcaaaagaaaatgactagatagaacagtaagatggagattaat---gaggggaataatggatggaatttggagttggaa |
8404052 |
T |
|
| Q |
117 |
gatgaaatgaatgaggtaattgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcatcaaagattaacaagggtttagcaa |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
8404051 |
aatgaaatgaaggaggtaattgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagtttagcaa |
8403952 |
T |
|
| Q |
217 |
tttttggacctttgttaacaggaattgcagctataggatcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggc |
316 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8403951 |
ttttaggacctttgttaacaggaattgcagctatagggtcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggc |
8403852 |
T |
|
| Q |
317 |
aactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8403851 |
aactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagtt |
8403752 |
T |
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| Q |
417 |
gaacaaactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgca |
485 |
Q |
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| T |
8403751 |
gaagaaattattgaagagaaagatttgaataaaagagaaaatgatgaggtgtttgagatgaagattgca |
8403683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 347 - 484
Target Start/End: Complemental strand, 8429676 - 8429539
Alignment:
| Q |
347 |
acaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaat |
446 |
Q |
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||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |
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| T |
8429676 |
acaagttggtatgatgtttcagatgtatagaaactgtagtggattttttgagcttttggaagagacggttgaagaaactattgaagataaagatttgaat |
8429577 |
T |
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| Q |
447 |
aaaagagaaaatggtgaggtgtttgagatgaagattgc |
484 |
Q |
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| T |
8429576 |
aaaagagaaaacggggaagtgtttgaaatgaagattgc |
8429539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 391
Target Start/End: Complemental strand, 8368183 - 8368104
Alignment:
| Q |
312 |
ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt |
391 |
Q |
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||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||| ||||||||||| |
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| T |
8368183 |
ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
8368104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 8401227 - 8401306
Alignment:
| Q |
312 |
ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt |
391 |
Q |
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||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||| ||||||||||| |
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| T |
8401227 |
ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
8401306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 8422804 - 8422883
Alignment:
| Q |
312 |
ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt |
391 |
Q |
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||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||| ||||||||||| |
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| T |
8422804 |
ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
8422883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 8411921 - 8411867
Alignment:
| Q |
323 |
tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga |
377 |
Q |
| |
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||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| |
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| T |
8411921 |
tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga |
8411867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 8434019 - 8433965
Alignment:
| Q |
323 |
tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga |
377 |
Q |
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||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| |
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| T |
8434019 |
tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga |
8433965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 8376087 - 8376139
Alignment:
| Q |
325 |
ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga |
377 |
Q |
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||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| |
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| T |
8376087 |
ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga |
8376139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 8431070 - 8431018
Alignment:
| Q |
325 |
ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga |
377 |
Q |
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||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| |
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| T |
8431070 |
ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga |
8431018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 8459649 - 8459708
Alignment:
| Q |
309 |
gctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgag |
368 |
Q |
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|||||||||||||||||||| || || || |||||||| |||||||||||||| |||||| |
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| T |
8459649 |
gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttgag |
8459708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 8417001 - 8416952
Alignment:
| Q |
324 |
gttaatacttttgagcatggaggacaagttggtatggtgtttgagatgta |
373 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |
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| T |
8417001 |
gttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta |
8416952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 377
Target Start/End: Complemental strand, 8405797 - 8405747
Alignment:
| Q |
327 |
aatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga |
377 |
Q |
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||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||| |
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| T |
8405797 |
aatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga |
8405747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 8368350 - 8368314
Alignment:
| Q |
145 |
tgaagagaaaagatattgaggattatgagagattagg |
181 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||| |
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| T |
8368350 |
tgaagagaaaagatatggaagattatgagagattagg |
8368314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 8401060 - 8401096
Alignment:
| Q |
145 |
tgaagagaaaagatattgaggattatgagagattagg |
181 |
Q |
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|||||||||||||||| || ||||||||||||||||| |
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| T |
8401060 |
tgaagagaaaagatatggaagattatgagagattagg |
8401096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 8422637 - 8422673
Alignment:
| Q |
145 |
tgaagagaaaagatattgaggattatgagagattagg |
181 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||| |
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| T |
8422637 |
tgaagagaaaagatatggaagattatgagagattagg |
8422673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 332 - 478
Target Start/End: Complemental strand, 55336151 - 55336005
Alignment:
| Q |
332 |
ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaa |
431 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || | || | ||||| ||||| || |||| |
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| T |
55336151 |
ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacacttgag |
55336052 |
T |
|
| Q |
432 |
gagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaa |
478 |
Q |
| |
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|||||||||||| | |||||||||||||||||| | ||||| ||||| |
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| T |
55336051 |
gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaa |
55336005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 331 - 442
Target Start/End: Complemental strand, 55330720 - 55330609
Alignment:
| Q |
331 |
cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattga |
430 |
Q |
| |
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||||||| ||||| |||||| |||||||||| ||||| ||||||||||| ||||||||||| || |||| ||||||||||| ||||| |||| | || |
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| T |
55330720 |
cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattgga |
55330621 |
T |
|
| Q |
431 |
agagaaagattt |
442 |
Q |
| |
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|||||||||||| |
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| T |
55330620 |
agagaaagattt |
55330609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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